View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_50 (Length: 239)
Name: NF6046_low_50
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 38462379 - 38462201
Alignment:
| Q |
1 |
aacatgcgtctggcacagtcatgacaaagatctgcgattacagagtcaacttttctgtacaccttctcagagtgaggaaagccatgaccttgcctttata |
100 |
Q |
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| T |
38462379 |
aacatgcgtctggcacagtcatgacaaagatctccgattacagagtcaacttttctgtacaccttctcagagtgaggaaagccatgaccttgcctttata |
38462280 |
T |
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| Q |
101 |
tgcaggaaggnnnnnnnnnntggaataaggaatggacaaagatctttcaatacttctacatgtcgaatatggttttaaaa |
180 |
Q |
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| T |
38462279 |
tgcaggaagg-aaaaaaaaatggaataaggaatgtacaaagatctttcaatacttctacatgtcgaatatggttttaaaa |
38462201 |
T |
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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 52091761 - 52091854
Alignment:
| Q |
121 |
tggaataaggaatggacaaagatctttcaatacttctacatgtcgaatatggttttaaaacaaccttagaactttgaaaaagaaccataacaaatc |
216 |
Q |
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| T |
52091761 |
tggaataaggaatgtgcaaagatcgttcaatacttctacatatcaaatatggtttt-aaacaatcttagaactttg-aaaagaaccataacaaatc |
52091854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 48753910 - 48753818
Alignment:
| Q |
122 |
ggaataaggaatggacaaagatctttcaatacttctacatgtcgaatatggttttaaaacaaccttagaactttgaaaaagaaccataacaaatc |
216 |
Q |
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| T |
48753910 |
ggaataaggaatgtgcaaa-atcgttcaatacttgtacatatcaaatatggttttaaaacaaccttagaactttg-aaaagaaccataacaaatc |
48753818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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