View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_56 (Length: 211)
Name: NF6046_low_56
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 42491916 - 42492073
Alignment:
| Q |
36 |
gggggcgtttgtttcccttctgnnnnnnntattcccaggattcttacattggaattaaacatgcctttgtttggtggataggaacaaagaaataagccca |
135 |
Q |
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| T |
42491916 |
gggggcgtttgtttcccttctgaaaaaaatattcccaggattcttacgttggaactaaacatgcctttgtttggtagataggaacaaaaaaataagctca |
42492015 |
T |
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| Q |
136 |
ggaataaataattcccgggaacnnnnnnncacccatgtttacccacgttctcctcaat |
193 |
Q |
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| T |
42492016 |
ggaataaataattcccaggaacaaaaaaacacccatgtttacccacgttctcctcaat |
42492073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 52365227 - 52365137
Alignment:
| Q |
33 |
tatgggggcgtttgtttcccttctgnnnnnnntattcccaggattcttacattggaattaaacatgcctttgtttggtggataggaacaaa |
123 |
Q |
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| T |
52365227 |
tatgggggcgtttgtttcccttctgaaaaaaatattcccaggattcttaccttggaattaaacatgcctttgtttggtagataggaacaaa |
52365137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 52365132 - 52365104
Alignment:
| Q |
165 |
cacccatgtttacccacgttctcctcaat |
193 |
Q |
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| T |
52365132 |
cacccatgtttacccacgttctcctcaat |
52365104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 9936270 - 9936104
Alignment:
| Q |
26 |
aaaacattatgggggcgtttgtttcccttctgnnnnnnntattcccaggattcttacattggaattaaacatgcctttgtttggtggataggaacaaaga |
125 |
Q |
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| T |
9936270 |
aaaaccttaagggggcgtttgtttcccttctgaaaaaaatattcccaggattcttacgttggaactaaacatgcctttgtttggtagataggaacaaaaa |
9936171 |
T |
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| Q |
126 |
aataagcccaggaataaataattcccgggaacnnnnnnncacccatgtttacccacgttctcctcaat |
193 |
Q |
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||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
9936170 |
aataagctcaggaataaataattcccaggaa-aaaaaaacacccatgtttacccacgttctcctcaat |
9936104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 6696019 - 6696136
Alignment:
| Q |
31 |
attatgggggcgtttgtttcccttctgnnnnnnntattcccaggattcttacattggaattaaacatgcctttgtttggtggataggaacaaagaaataa |
130 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||| |
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| T |
6696019 |
attaagggggcgtttgtttcccttctgaaaaaaatattcccaggattcttacgttggaactaaacatgcctttgtttggtagataggaacaaaaaaataa |
6696118 |
T |
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| Q |
131 |
gcccaggaataaataatt |
148 |
Q |
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| T |
6696119 |
gcccaggaataaataatt |
6696136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 39345226 - 39345383
Alignment:
| Q |
36 |
gggggcgtttgtttcccttctgnnnnnnntattcccaggattcttacattggaattaaacatgcctttgtttggtggataggaacaaagaaataagccca |
135 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||| |||| ||||||| ||||||||||| |
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| T |
39345226 |
gggggcgtttgtttcccttctgaaaaaaatattcccaggattcttacgttggaactaaacatgtctttgtttggtagataagaacaaaaaaataagccca |
39345325 |
T |
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| Q |
136 |
ggaataaataattcccgggaacnnnnnnncacccatgtttacccacgttctcctcaat |
193 |
Q |
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||||||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
39345326 |
ggaataaataattcctaggaacaaaaaaacgcccatgtttacccacgttctcctcaat |
39345383 |
T |
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