View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_6 (Length: 577)
Name: NF6046_low_6
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Complemental strand, 1157335 - 1156789
Alignment:
| Q |
13 |
aatattggactgttgccgattaataattcatcagaagattattgcagcactctcaaaattaatattgatgatactgtccccacaaattacttcatgtgtt |
112 |
Q |
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| T |
1157335 |
aatattggattgttgccgattaataactcatccgaagattattgcagcactctcaaaattaatattgatgatactgtccctacaatttacttcaggtgtt |
1157236 |
T |
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| Q |
113 |
ccaaagatcatggtcatcattgcccttatttgagcataggtacaacaaggatttatggtaggtgtggtaatcgtttgaactgttcagtttcgctagcaca |
212 |
Q |
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| T |
1157235 |
cgaaagatcatggtcatcattgcccttatttgagcataggtacaaaatatatttatggtaggtgtggtaatcgcttgaaccgttcagtttccctagcaca |
1157136 |
T |
|
| Q |
213 |
gttgtgcaatggatttgttaaaggtgctaccactttcatcattactgatgatctgattgtcttgccgcactccatcgatcacacgttattggatctgatc |
312 |
Q |
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| T |
1157135 |
gctgtgcaatggatttgttaaaggtgctacgacttttgtcattactgatgatctatttgtctcgccacactccatcaatcacacgttattggatctgatc |
1157036 |
T |
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| Q |
313 |
aagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaagggttttatatttgcaattcatttttgtttcctaaa |
412 |
Q |
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| T |
1157035 |
aagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaaaggttttatatttgcaattcatttttgtttcctaaa |
1156936 |
T |
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| Q |
413 |
tcagtgttcatagtttcttggtactttctcttattcgccactttttagctctaatttttcaattcactactgtctttgattgattagtgctaattctgta |
512 |
Q |
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| T |
1156935 |
tcattgttcttagtttcttagtacttgctcttattcgccactttttaactttaatttttcaattcactactgtctttgattgatttgtactaattatgta |
1156836 |
T |
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| Q |
513 |
caggtattggatctgcttaagtgttccttgctttccaagacacctct |
559 |
Q |
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| T |
1156835 |
caggtattggatctgcttaagtgttccttgctttccaagacacctct |
1156789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 457
Target Start/End: Complemental strand, 23259347 - 23258909
Alignment:
| Q |
23 |
tgttgccgattaataattcatcagaagattattgcagcactctcaaaattaatattgatgatactgtccccacaaattacttcatgtgttccaaagatca |
122 |
Q |
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| T |
23259347 |
tgttgccgagtactaactcatctgaagattattgtggcagtctcaaaattaacattgatgatactgaccctaaaaattacttcatttgttccaagtttga |
23259248 |
T |
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| Q |
123 |
tgg---tcatcattgcccttatttgagcataggtacaacaaggatttatggtaggtgtggtaatcgtttgaactgttcagtttcgctagcacagttgtgc |
219 |
Q |
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| | ||| ||| | |||| ||||| ||||||| ||| | |||| ||||||||| |||||| ||||| |||| ||||| | |||||| || |
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| T |
23259247 |
agactataatcgttgtaataatttaagcattggtacaaaaagaaattattgtaggtgtgaaaatcgtatgaaccgttcggtttccatgacacagtcaggc |
23259148 |
T |
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| Q |
220 |
aatggatttgttaaaggtgctaccactttcatcattactgatgatctgattgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatt |
319 |
Q |
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| T |
23259147 |
aatggatttgttaaagatgattctatgttttttgttactgatgatctaactgtcttgccgcactctatggatcacacgttgtttggtctggtcaataatt |
23259048 |
T |
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| Q |
320 |
tgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaagggtttt-atatttgcaattcatttttgtttcctaaatcagtg |
418 |
Q |
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|| ||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||| |||||||||||| ||||||| | ||||||||| || |
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| T |
23259047 |
tgcaaatgagaaacacaagttcagtaaaagaaatgacggtctatgtcacgaaggaaaaggttttaatatttgcaattaatttttgctccctaaatcattg |
23258948 |
T |
|
| Q |
419 |
ttcatagtttcttggtactttctcttattcgccactttt |
457 |
Q |
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||| |||||| || || ||| |||| ||| |||| |||| |
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| T |
23258947 |
ttcttagttttttagttcttgctctaatttgccattttt |
23258909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 270 - 559
Target Start/End: Complemental strand, 23251337 - 23251054
Alignment:
| Q |
270 |
tgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcact |
369 |
Q |
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| T |
23251337 |
tgtcttgccgcattccatggatcacatgatctttgatctgagcaacaactttggaataaaaagcacaagttcgatcaaagaaatgacggtcaatgtcaca |
23251238 |
T |
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| Q |
370 |
aaggaaagggttttatatttgcaattcatttttgtttcctaaatcagtgttcatagtttcttggtactttctcttattcgccactttttagctctaattt |
469 |
Q |
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| T |
23251237 |
aagggaaaggttttacatatgc---------ttattctctaaatcactattccttgtttcttggtaattgctctagtttgccactttttaagttgtattc |
23251147 |
T |
|
| Q |
470 |
ttcaattcactact---gtctttgattgattagtgctaattctgtacaggtattggatctgcttaagtgttccttgctttccaagacacctct |
559 |
Q |
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| T |
23251146 |
ttcaattcactattttagtctttgattgattagaagtaatattctgcaggtattggatctgttaaagtgttcattgttttccaagacacctct |
23251054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 556
Target Start/End: Complemental strand, 23342289 - 23342238
Alignment:
| Q |
505 |
attctgtacaggtattggatctgcttaagtgttccttgctttccaagacacc |
556 |
Q |
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| T |
23342289 |
attctctacaggtattggatctgctgaagtgttctttgttttcaaagacacc |
23342238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 23251579 - 23251509
Alignment:
| Q |
46 |
gaagattattgcagcactctcaaaattaatattgatgatactgtccccacaaattacttcatgtgttccaa |
116 |
Q |
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| T |
23251579 |
gaagattattgccgcactctcagaattaattttgatgactctcagcccacaaagtacttcatatgttccaa |
23251509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 23316758 - 23316708
Alignment:
| Q |
333 |
cacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaagggtttt |
383 |
Q |
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| T |
23316758 |
cacaagttctgcaaaagaaatgactgtaaatgtcactaaagaaaaggtttt |
23316708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 23327138 - 23327061
Alignment:
| Q |
311 |
tcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaa-agggttttatat |
387 |
Q |
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| T |
23327138 |
tcaagaattatgggataaaaagcacaagttcactaaagcaaatgactgtcaatgttactaaggaacaggtttttatat |
23327061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 23322919 - 23322871
Alignment:
| Q |
37 |
aattcatcagaagattattgcagcactctcaaaattaatattgatgata |
85 |
Q |
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| T |
23322919 |
aattcatcggaagattattgcagcactcttaaatttaacatcgatgata |
23322871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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