View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_8 (Length: 543)
Name: NF6046_low_8
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 31389121 - 31389628
Alignment:
| Q |
18 |
atcaaatattggtgatagcatccccccaccatatctcttcctatacaagaccatagcacaaccacataaatacttgtgatgccaaatatttcatac-tca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31389121 |
atcaaatattggtgatagcatccccccaccatatctcttcctatacaagaccatagcacaaccacataaatacttgtgatgccaaatatttcatacctca |
31389220 |
T |
|
| Q |
117 |
aaatgcagtttcattagcctatctactcatcacatgccacatgtcactacatgcataattagccacatatctataattgctatatctcattcccactctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389221 |
aaatgcagtttcattagcctatctactcatcacatgccacatgtcactacatgcataattagccacatatctataattgctatatctcattcccactctc |
31389320 |
T |
|
| Q |
217 |
nnnnnnncaatgcaataacaaaacaacatcctcatcaaaacttttcaacataannnnnnnnncagccatggaaactagtatagcatgttactccagtggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31389321 |
tttttttcaatgcaataacaaaacaacatcctcatcaaaacttttcaacataatttttttttcagccatggaaactagtatagcatgttactccagtggt |
31389420 |
T |
|
| Q |
317 |
gcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccctcttctgccttcagggtatgtactatagtataatcttaaaagttattta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | || |||| |
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| T |
31389421 |
gcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccctcttctgccttcagggtatgtacaatag-----tcttaagaatttttta |
31389515 |
T |
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| Q |
417 |
tttcaatgattaatttattggaaagttcttttatgcactttattctatca-tatgtaacttattctacgtgtgatatttatgctttcatttaattgaaga |
515 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31389516 |
tttcaatgattaattaattggaaagttatgttatgcactttattctatcattatgtaacttattctacgtgtgatatttatgcttttatttaattgaaga |
31389615 |
T |
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| Q |
516 |
agaatactgacat |
528 |
Q |
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|||||||| |||| |
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| T |
31389616 |
agaatactaacat |
31389628 |
T |
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