View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6047_high_3 (Length: 271)
Name: NF6047_high_3
Description: NF6047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6047_high_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 4775805 - 4775542
Alignment:
| Q |
8 |
ccaagaatattctcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattttgttc |
107 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4775805 |
ccaacaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttcactctaggatgaagcatattgccatagattatcattttgttc |
4775706 |
T |
|
| Q |
108 |
gcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775705 |
gcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatca |
4775606 |
T |
|
| Q |
208 |
cttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775605 |
cttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagta |
4775542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 43061160 - 43060900
Alignment:
| Q |
14 |
atattctcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattttgttcgcgatc |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
43061160 |
atattctcagacaacattagagctacatatctatgtgcaaaccctgtttttcactataggatgaaacacattgccatagattatcattttgtttgcgatc |
43061061 |
T |
|
| Q |
114 |
tcgttgccgc---caagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcactt |
210 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
43061060 |
tcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacgacatcactt |
43060961 |
T |
|
| Q |
211 |
ccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagta |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
43060960 |
ccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtaggagta |
43060900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 45192874 - 45192927
Alignment:
| Q |
26 |
aacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaa |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttcactctcggatgaaa |
45192927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 25450346 - 25450434
Alignment:
| Q |
20 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattttgttcg |
108 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||||| ||||| |
|
|
| T |
25450346 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcatttcgttcg |
25450434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 2607367 - 2607279
Alignment:
| Q |
20 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattttgttcg |
108 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||||| ||||| |
|
|
| T |
2607367 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcatttcgttcg |
2607279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 31924982 - 31925070
Alignment:
| Q |
20 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattttgttcg |
108 |
Q |
| |
|
||||||||||| | || |||||||||||||| |||||||||||||| || | || || || |||| |||||||||||||| ||||| |
|
|
| T |
31924982 |
tcagacaacatcgttgcaacatatctatgtgcgaacccagtttttcatactcgaataaagcatcttgcaatagattatcatttcgttcg |
31925070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University