View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6048_high_1 (Length: 359)
Name: NF6048_high_1
Description: NF6048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6048_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 8625235 - 8625581
Alignment:
| Q |
13 |
agcacagacctgtgaatcagtatcaatcacatgtggagcttcaagattagtttcaaacttaactccaagttcagaagaaaacgacgtcattggtgacagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8625235 |
agcacagacctgtgaatcagtatcaatcacatgtggagcttcaagattagtttcaaacttaactccaagttcagaagaaaacgacatcattggtgacagt |
8625334 |
T |
|
| Q |
113 |
gtcctaaaaataccccaaatcgataagtcgatgatactagaatattgctacgaaacagagatgctattaactgaactcacttctatacaagttttgaccc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8625335 |
gtcctaaaaataccccaaatcgataagtcgatgatactagaatattgctacgaaacagagatgctattaactgaactcacttctatacaagttttgaccc |
8625434 |
T |
|
| Q |
213 |
tcatgccaagtgttgcagcagttaagaaaacaaataacaatcagcaatatatgatattgatatatcatattgatcacttatttggtgaaactttaaccac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8625435 |
tcatgccaagtgttgcagcagttaagaaaacaaataacaatcagcaatatatgatattgatatatcatattgatcacttatttggtgaaactttaaccac |
8625534 |
T |
|
| Q |
313 |
aaatgcttaatgcagcgttgcctcactggaaccgaatttcaacaaat |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8625535 |
aaatgcttaatgcagcgttgcctcactggaaccgaatttcaacaaat |
8625581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University