View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6048_high_2 (Length: 203)
Name: NF6048_high_2
Description: NF6048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6048_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 8625979 - 8626160
Alignment:
| Q |
5 |
aaaacacagtatagggactggctccagcatggacaagtattacagggtctaaaaacaaggactaaaagcagatttcctatatttcatgaattaaaacaga |
104 |
Q |
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| T |
8625979 |
aaaacaaagtatagggactggctccagcatggacaagtattacagggtctaaaaacaaggactaaaagcagatttcctatatttcatgaattaaaacaga |
8626078 |
T |
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| Q |
105 |
ccgtaattttttaaggactaaaccagaaaatgtgcacatggcatggattaaaaagatgtttaaaccaatgcagtatcatgtt |
186 |
Q |
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| T |
8626079 |
ccgtaattttttaaggactaaaccagaaaatgtgcacatggcatggattaaagagatgtttaaaccaatgcagtatcatgtt |
8626160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 8625928 - 8625985
Alignment:
| Q |
5 |
aaaacacagtatagggactggctccagcatggacaagtattacagggtctaaaaacaa |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8625928 |
aaaacacagtatagggactggctccagcatggacaagtattacagggactaaaaacaa |
8625985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 8625885 - 8625933
Alignment:
| Q |
13 |
gtatagggactggctccagcatggacaagtattacagggtctaaaaaca |
61 |
Q |
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| T |
8625885 |
gtatagggactggctccagcatggacaagtattacagggactaaaaaca |
8625933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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