View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_high_12 (Length: 349)
Name: NF6051_high_12
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 2429156 - 2428825
Alignment:
| Q |
1 |
ataacagggaagaataacacgtagcagcagcaaccaacaattcatatgcgcagcaaattaaagaggttagcacgacacagtttaaattctagaatgggag |
100 |
Q |
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| T |
2429156 |
ataacagggaagaataacacgtagcagcagcaaccaacaattcatatgcgcagcaaattaaagaggttagcacgacacagtttaaattctagaatgggag |
2429057 |
T |
|
| Q |
101 |
ttcactttcgaacaaccatgcagcaagcacgccaccaaggattaatttcacaaggagatttaaataaatggtagtagtaataacaaacagaatttacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429056 |
ttcactttcgaacaaccatgcagcaagcacgccaccaaggattaatttcacaaggagatttaaataaatggtagtagtaataacaaacagaatttacctt |
2428957 |
T |
|
| Q |
201 |
gcctaactcatgcaataacccgacagtatatagtttgatttgttcgttatccgattgaaccgtttgcatcaaaattggtattacaccaagttgagcaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428956 |
gcctaactcatgcaataacccgacagtatatagtttgatttgttcgttatccgattgaaccgtttgcatcaaaattggtattacaccaagttgagcaagt |
2428857 |
T |
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| Q |
301 |
gcaacctaaaacattcatacaaaacaatttaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
2428856 |
gcaacctaaaacattcatacaaaacaatttaa |
2428825 |
T |
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