View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6051_high_15 (Length: 271)

Name: NF6051_high_15
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6051_high_15
NF6051_high_15
[»] chr4 (56 HSPs)
chr4 (11-271)||(27444689-27444949)
chr4 (11-271)||(27431043-27431303)
chr4 (11-213)||(27554294-27554496)
chr4 (15-267)||(27557478-27557727)
chr4 (11-202)||(27498400-27498591)
chr4 (11-204)||(27526074-27526267)
chr4 (11-245)||(27501302-27501536)
chr4 (11-196)||(27486968-27487153)
chr4 (11-188)||(27505680-27505857)
chr4 (11-204)||(27513738-27513931)
chr4 (19-196)||(27479894-27480071)
chr4 (11-196)||(27523373-27523558)
chr4 (11-195)||(27516580-27516764)
chr4 (11-188)||(27469445-27469622)
chr4 (11-204)||(27473877-27474070)
chr4 (11-179)||(17970284-17970452)
chr4 (11-166)||(27425797-27425952)
chr4 (11-185)||(27500319-27500493)
chr4 (11-204)||(27466806-27466999)
chr4 (11-196)||(27476672-27476857)
chr4 (37-188)||(27460489-27460640)
chr4 (11-166)||(27570049-27570204)
chr4 (19-173)||(27414297-27414451)
chr4 (53-166)||(27412691-27412804)
chr4 (53-185)||(27567282-27567414)
chr4 (53-167)||(27411455-27411569)
chr4 (94-188)||(27502113-27502207)
chr4 (11-219)||(27502754-27502962)
chr4 (11-166)||(27563346-27563501)
chr4 (19-165)||(27571616-27571762)
chr4 (11-173)||(27415609-27415768)
chr4 (19-183)||(27419054-27419218)
chr4 (11-166)||(27485943-27486098)
chr4 (11-166)||(27506683-27506838)
chr4 (11-165)||(27478884-27479038)
chr4 (68-166)||(27503964-27504062)
chr4 (11-173)||(27585673-27585835)
chr4 (19-167)||(27424513-27424661)
chr4 (19-183)||(27556362-27556526)
chr4 (11-166)||(27420393-27420548)
chr4 (19-173)||(27421924-27422082)
chr4 (122-219)||(27507760-27507857)
chr4 (86-162)||(27490020-27490096)
chr4 (19-183)||(27559223-27559387)
chr4 (68-166)||(27468327-27468425)
chr4 (68-166)||(27524566-27524664)
chr4 (68-165)||(27475580-27475677)
chr4 (68-173)||(27514933-27515038)
chr4 (57-180)||(27423253-27423376)
chr4 (11-164)||(27565953-27566106)
chr4 (136-173)||(27495646-27495683)
chr4 (136-173)||(27600663-27600700)
chr4 (6-146)||(27527141-27527281)
chr4 (11-166)||(27497322-27497477)
chr4 (70-161)||(27508896-27508987)
chr4 (129-185)||(27446250-27446306)
[»] chr3 (14 HSPs)
chr3 (11-196)||(38040051-38040236)
chr3 (11-196)||(38028736-38028921)
chr3 (11-196)||(38036763-38036948)
chr3 (11-197)||(50904761-50904947)
chr3 (11-197)||(38024844-38025030)
chr3 (11-197)||(38031296-38031482)
chr3 (21-197)||(55084781-55084957)
chr3 (11-197)||(50909945-50910131)
chr3 (11-197)||(38033744-38033934)
chr3 (19-166)||(38043896-38044043)
chr3 (11-182)||(48840696-48840866)
chr3 (11-182)||(50911853-50912024)
chr3 (19-79)||(50913489-50913549)
chr3 (136-183)||(38035165-38035212)
[»] chr8 (3 HSPs)
chr8 (11-196)||(21604724-21604909)
chr8 (11-197)||(21607265-21607451)
chr8 (91-182)||(21634608-21634699)
[»] chr2 (1 HSPs)
chr2 (11-179)||(3073554-3073722)
[»] chr5 (4 HSPs)
chr5 (11-202)||(1754206-1754396)
chr5 (31-196)||(1759253-1759422)
chr5 (11-166)||(1756757-1756912)
chr5 (57-173)||(1754719-1754835)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 27444949 - 27444689
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444949 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 27444850  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444849 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgc 27444750  T
Q  211 taatatcttcagatgaaggaactgacatagattattttaggcaaaattgtacagaaggcac 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444749 taatatcttcagatgaaggaactgacatagattattttaggcaaaattgtacagaaggcac 27444689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 27431303 - 27431043
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||    
T  27431303 caaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatca 27431204  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgc 210  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27431203 agccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaatctgtgc 27431104  T
Q  211 taatatcttcagatgaaggaactgacatagattattttaggcaaaattgtacagaaggcac 271  Q
    ||| ||||||||| ||||||||||| ||||||||||| ||| |||||||||||| ||||||    
T  27431103 taacatcttcagaagaaggaactgaaatagattatttgaggaaaaattgtacagcaggcac 27431043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 27554294 - 27554496
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||||||||  |||| || |  || |||||| |||| |||||||||||  |||||||    
T  27554294 caaagggataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatca 27554393  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgc 210  Q
    ||| ||||||||||| |||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27554394 agctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaatctgtgc 27554493  T
Q  211 taa 213  Q
    |||    
T  27554494 taa 27554496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 27557478 - 27557727
Alignment:
Q  15 gggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagcc 114  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||  ||||||||||     
T  27557478 gggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagct 27557577  T
Q  115 gaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgctaat 214  Q
    ||||||||||| | |||||  |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| || |||  |  || || |     
T  27557578 gaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttcgcgcttgtgtaggttct-ag 27557676  T
Q  215 atcttcagatgaaggaactgacatagattattttaggcaaaattgtacagaag 267  Q
    | ||||  | |||| | |||||||||||||||||||||||| |||||||||||    
T  27557677 accttc--aagaagtatctgacatagattattttaggcaaatttgtacagaag 27557727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 27498400 - 27498591
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| |||||||| |||||||||||||||||  | ||||||||||| ||||||||||||| |||| |||| || ||||| || ||||| ||    
T  27498400 caaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacca 27498499  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttga 202  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||| | ||||||||||| |||||||||||||    
T  27498500 agccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctcgtttga 27498591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 27526267 - 27526074
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| ||||| || ||||||||| |||||||| |||||||||| ||  |||||||||||| |||| | ||||| |||||||| ||||  ||    
T  27526267 caaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcca 27526168  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 204  Q
    ||| ||||||||||| | |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  27526167 agctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaat 27526074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 27501302 - 27501536
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||| | |||| |||  |||||||| || ||||| ||    
T  27501302 caaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaacca 27501401  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgc 210  Q
    ||||||||||||||| | ||| || ||||||| |||||||||||| |||||||| ||||||||| | ||||||||||| |||||| |||||| |  ||||    
T  27501402 agccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcacttcttgtttgagtaggtgc 27501501  T
Q  211 taatatcttcagatgaaggaactgacatagattat 245  Q
    ||||  |||  |  |||||| ||||||||||||||    
T  27501502 taatccctttggtagaaggagctgacatagattat 27501536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 27486968 - 27487153
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||  |||||||||| | |||| |||| ||||||||||| ||||| ||    
T  27486968 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacca 27487067  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    ||| || |||||||| | |||||| ||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||    
T  27487068 agctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctc 27487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 27505857 - 27505680
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||| ||||| ||||| |||||| |||||||| |||||||||| ||  |||||||||||| |||| | ||||| |||||||| ||||| ||    
T  27505857 caaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacca 27505758  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 188  Q
    ||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  27505757 agctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatat 27505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 27513931 - 27513738
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||| |||||||| ||||| || || |||||| |||||||| ||||||||||||||||||||||||||| |||| | || || |||||||| ||||| ||    
T  27513931 caaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacca 27513832  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 204  Q
    ||| || |||||||  | |||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||    
T  27513831 agctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaat 27513738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 27479894 - 27480071
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||||||||| |||||| |||||||| | |||||||| ||  |||||||||||| |||| ||||||| ||| | || ||||| ||||| ||||    
T  27479894 tatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgagg 27479993  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    ||||||| | |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  27479994 aacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctc 27480071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 27523558 - 27523373
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||| ||||| ||||| |||||| |||||||| |||||||||| ||  ||||||| |||| |||| | ||||| |||||||| ||||   |    
T  27523558 caaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcga 27523459  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    ||||||||||||||| | |||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||    
T  27523458 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctc 27523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 27516764 - 27516580
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| || || || || ||| |||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| |||||||| ||||| ||    
T  27516764 caaagggatatctagctgtgtatgtaggaaaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaacca 27516665  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttct 195  Q
    ||| ||||||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||| ||||||    
T  27516664 agctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttct 27516580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 27469445 - 27469622
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| ||||| ||||| |||||| |||||||| ||||||||||||| |||||||| ||||  ||| ||||||| |||||| | ||||  ||    
T  27469445 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcca 27469544  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 188  Q
    ||| || |||||||| | |||||| ||||||||||||||||| || |||||||||||||||||  |||||||||||||    
T  27469545 agctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgcagagaagaaattttcttagatat 27469622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 27473877 - 27474070
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| || || ||||| |||||||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| ||||||||  |||  ||    
T  27473877 caaagggatatctagctgtgtacgtaggagaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagcca 27473976  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 204  Q
    |   ||||||||||| | |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||| ||||||    
T  27473977 aagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaat 27474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 17970284 - 17970452
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| | ||  ||| ||     
T  17970284 caaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcg 17970383  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgtttt 179  Q
     || |||||| |||||||||| || |||||||||||||| |||||||||||||||| |||||| |||||    
T  17970384 ggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttt 17970452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 27425797 - 27425952
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||||||||||||||| ||||||||| ||   ||| ||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||    
T  27425797 caaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtca 27425896  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    |   |||||| | || |||||||| ||||| |||||||| ||||| ||||||||||    
T  27425897 atttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgca 27425952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 27500493 - 27500319
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||| |||||||| ||||| ||||| |||||| |||||||| | ||||||||||| ||||||||||| | ||||   ||||| ||||||||  |||  ||    
T  27500493 caaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagcca 27500394  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttaga 185  Q
    | | || ||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  27500393 atctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttaga 27500319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 27466806 - 27466999
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| ||||| ||||| ||| |||| |||||||| ||||||||||| |||||||| ||||  |||  || ||| |||||| |  |||  ||    
T  27466806 caaagggatatctagcagtgtacgtaggaaaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaattattccaagaactgctgagcca 27466905  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 204  Q
    |   ||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||| | ||||||    
T  27466906 aagtgaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaat 27466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 27476672 - 27476857
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| ||||| || ||||| ||| |||||||| |||||||||| ||  |||||||||||| |||| | ||||| |||||| |  |||  ||    
T  27476672 caaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcca 27476771  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    |   ||||||||||| | |||||| ||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||    
T  27476772 aagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctc 27476857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 27460489 - 27460640
Alignment:
Q  37 ggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgacc 136  Q
    |||||||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| ||||||||  |||  |||   ||||||||||| | |||||| |    
T  27460489 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatc 27460588  T
Q  137 atccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 188  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  27460589 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatat 27460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 27570204 - 27570049
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||||||||||||||| ||||||||| ||  || | ||| |||||||||  |||||||||| |||||| | ||||||||||| ||  ||| |||    
T  27570204 caaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtca 27570105  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||| |||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||    
T  27570104 agctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgca 27570049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 27414451 - 27414297
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||||||||| |||||||||||  ||||||   |||||||||| ||  |||||||||||| |||| | ||||||||||||||| | |||||| | || |    
T  27414451 tatcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaag 27414352  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 173  Q
    || |||| |||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27414351 aagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaaga 27414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 27412691 - 27412804
Alignment:
Q  53 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 152  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||| |||||| || ||| | || |||||||| |||||||||||||| ||    
T  27412691 ggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcct 27412790  T
Q  153 cacaattccttgca 166  Q
    ||| ||||||||||    
T  27412791 caccattccttgca 27412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 27567282 - 27567414
Alignment:
Q  53 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 152  Q
    |||| ||||| ||| |||||||||||| |||| |||| |||||||||||| | |||||| | || ||| |||| || ||||| |||||||||||||||||    
T  27567282 ggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtct 27567381  T
Q  153 cacaattccttgcagagaagacgttttcttaga 185  Q
    ||||||||||||||| ||||| | |||||||||    
T  27567382 cacaattccttgcagcgaagatgctttcttaga 27567414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 27411569 - 27411455
Alignment:
Q  53 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 152  Q
    |||| ||||| ||| |||||||||||| |||| |||| |||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27411569 ggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 27411470  T
Q  153 cacaattccttgcag 167  Q
    |||||||||||||||    
T  27411469 cacaattccttgcag 27411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 27502207 - 27502113
Alignment:
Q  94 caagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 188  Q
    |||||||| ||||| ||||| ||||||||||| | |||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatat 27502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 27502962 - 27502754
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||| ||||||||||| || || || |||||| | |||||| |||||||||| ||||| ||||| ||||  ||| | ||||||||||| ||  |||  ||    
T  27502962 caaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagcca 27502863  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgc 210  Q
    ||| | |||| |||| |||||||||||||||||||||||||| || ||||||||   ||||||  ||||| ||||||| |||||||| |||| |  ||||    
T  27502862 agctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttgtgaagaagattttttcgtagatatcacttctcgcttgagtaggtgc 27502763  T
Q  211 taatatctt 219  Q
    ||| |||||    
T  27502762 taacatctt 27502754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 27563501 - 27563346
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| |||||||||||  ||   |||||  ||||||||||  |||||||||||| |||| |||  |||||||| ||  ||| |||    
T  27563501 caaagggctatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtca 27563402  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    |||||| ||| | || |||||||| |||||||||||||| ||||||||||||||||    
T  27563401 agccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgca 27563346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 27571616 - 27571762
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||| || ||||||||   ||||| | |||| ||||| ||| ||||||| ||||||||  |||| |||||||||||| | |||||| | || |    
T  27571616 tatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaag 27571715  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgc 165  Q
    || |||| |||||||| ||||||||||||||||||||||||||||||    
T  27571716 aagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 27415609 - 27415768
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||||||||| || |||||| |  |||   || | ||||||||||| ||||||||||||| |||| |||| |||||||| || |||| |||    
T  27415609 caaagggatatcttgcagtgtatgttggaaaacaaa---agcgatttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtca 27415705  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 173  Q
    ||| |||||| | || |||||||| ||| | |||||||| ||||| |||||||||| ||||||    
T  27415706 agctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttgcacagaaga 27415768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 27419218 - 27419054
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||| || ||||||||   ||||| | |||| ||||| ||| ||||||| ||||||||  |||| |||||||||||| | |||||| | || |    
T  27419218 tatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaag 27419119  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 183  Q
    || |||| |||||||| ||||||||||||||||| |||||||||||| | ||||| | |||||||    
T  27419118 aagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctta 27419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 27486098 - 27485943
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||| ||||||| || ||||||||| ||  |||| |||||||  |||||||||||||||||| |||| |||  |||||||||||  |  ||||    
T  27486098 caaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatca 27485999  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||| || ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27485998 agcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 27506683 - 27506838
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||| |||||||||| || |||||| ||  || | ||||||||||||||||||||||||| | |||| |||  |||||||||||  |  ||||    
T  27506683 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 27506782  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||| || ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27506783 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 27506838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 27479038 - 27478884
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||| ||||||| || ||||||||| ||  |||| |||||||  |||||||||||||||||| |||| |||  |||||||||||  |  ||||    
T  27479038 caaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatca 27478939  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 165  Q
    ||| || ||| |||| |||||||| ||||| |||||||| ||||| |||||||||    
T  27478938 agcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 27503964 - 27504062
Alignment:
Q  68 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    |||||||||||| |||| | ||||||||||| || |||| ||||||||||||| | || |||||||| |||||||||||||| ||||| ||||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 27585673 - 27585835
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||| ||||| | |||||| ||  ||   ||||| |||||||||||  |||||||||||| |||| |||  |||||||| ||  ||| |||    
T  27585673 caaagggatatctcgcagtgtgcgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtca 27585772  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 173  Q
    |||||| ||| | || |||||||| ||||||||||| |||||||| |||||||||| ||||||    
T  27585773 agccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacagaaga 27585835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 27424661 - 27424513
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||| || ||||||||  |||||| | |||||||||| ||| |||||||||||| |||| | ||||||||||||||  | |||||| | || |    
T  27424661 tatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaag 27424562  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgcag 167  Q
    || |||  |||||||| ||||||||||||||||| || ||||| |||||    
T  27424561 aagaatatggatatgatcatccaatgggtggtcttaccattccgtgcag 27424513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 27556526 - 27556362
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||| || ||||||||  |||||||| | |||||||| || || ||||  |||| |||| | ||||||||||||||| |  ||||||| || |    
T  27556526 tatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaattactacatcaagcagaag 27556427  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 183  Q
    || |||| |||||||| ||| | |||||||||||||||||||| ||||| ||||| | |||||||    
T  27556426 aagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatgctttctta 27556362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 27420393 - 27420548
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||||||||||||||| ||||||||| ||  || | ||| | | |||||  ||||||||||||||||| | ||||||||||  ||  ||| |||    
T  27420393 caaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtca 27420492  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||  |||||| | || |||||||| ||||| |||||||| ||||| ||||||||||    
T  27420493 agttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgca 27420548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 27422082 - 27421924
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||| || ||||||||   ||||||  |||| ||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || |    
T  27422082 tatctcgcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaag 27421983  T
Q  119 aacaatt----cggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 173  Q
    || ||||     ||||| || ||||||| |||||||||||||||||||||||| |||||    
T  27421982 aagaatttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaaga 27421924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 27507857 - 27507760
Alignment:
Q  122 aattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaatctgtgctaatatctt 219  Q
    |||| |||||||||||||||||||||||||| |||||||||||   ||||||  ||||||||||||| |||||||| |||| |  ||||||| |||||    
T  27507857 aatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttgagtaggtgctaacatctt 27507760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 27490020 - 27490096
Alignment:
Q  86 catcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcct 162  Q
    ||||||||||||| || |||||||||||||||||| | || |||||||| |||||||||||||| ||||| ||||||    
T  27490020 catcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 27559387 - 27559223
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||| ||||| || ||||||||  |||||||||| ||| |||| || || ||||  ||||  ||||| ||||||||| | ||||| |  ||| | || |    
T  27559387 tatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaagccaatcagaag 27559288  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 183  Q
    || | || |||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||    
T  27559287 aagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgctttctta 27559223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 27468425 - 27468327
Alignment:
Q  68 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    |||||||||| | |||| | ||||||||||| || |||| |||| |||||||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27468327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 27524566 - 27524664
Alignment:
Q  68 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||||||| |||| |||| | ||||||||||| || ||||||||||| |||||| | || |||||||| |||||||||||||| ||||| ||||| ||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  68 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 165  Q
    ||||||||||||  ||| | ||||||||||| || |||| ||||||||||||| | || |||||||| ||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 27514933 - 27515038
Alignment:
Q  68 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcag 167  Q
    ||||||||||||  ||| | ||||||||||| || |||| |||| |||||||| |||| |||||||| ||||| |||||||| ||||| |||||||| |     
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtac 27515032  T
Q  168 agaaga 173  Q
    ||||||    
T  27515033 agaaga 27515038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 27423253 - 27423376
Alignment:
Q  57 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 156  Q
    ||||||||  ||||||||||||| |||| | |||||||||||||| |||| ||||||||||||| | || || ||  | ||||| |||||||| |||||     
T  27423253 tgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 27423352  T
Q  157 attccttgcagagaagacgttttc 180  Q
     |||||||||  ||||| ||||||    
T  27423353 gttccttgcacggaagatgttttc 27423376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 27566106 - 27565953
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||||||||| || ||||||||| ||   ||| | ||||||||||| ||||||||| ||| |||| |||  |||||||| ||  |||  ||    
T  27566106 caaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgataca 27566007  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttg 164  Q
    ||  |||||| |    |||||||| |||||||||||||| ||||| ||||||||    
T  27566006 agttgaggaagagcatggatatgatcatccaatgggtggcctcaccattccttg 27565953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 27495646 - 27495683
Alignment:
Q  136 catccaatgggtggtctcacaattccttgcagagaaga 173  Q
    |||||||||||||||||||| |||||||||||||||||    
T  27495646 catccaatgggtggtctcaccattccttgcagagaaga 27495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 27600663 - 27600700
Alignment:
Q  136 catccaatgggtggtctcacaattccttgcagagaaga 173  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27600663 catccaatgggtggtctcacaattccttgcaaagaaga 27600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 27527141 - 27527281
Alignment:
Q  6 agtagcaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattg 105  Q
    |||| ||||||| |||||||| || || ||||||||  ||  |||  |||||||||||||||||||| |||| | |||| |||| |||| ||| ||  ||    
T  27527141 agtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctg 27527240  T
Q  106 aatcaagccgaggaacaattcggatatgaccatccaatggg 146  Q
    | |||||| |||||| | || |||||||| ||||| |||||    
T  27527241 agtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 27497477 - 27497322
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||| ||||||| || ||||||||  ||   ||| ||||||||||||| || |||||||| | |||| |||  |||||| | || |||| |||    
T  27497477 caaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtca 27497378  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||| |||||| | || |||||||| ||||| |  ||||| ||||| ||||||||||    
T  27497377 agctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgca 27497322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  70 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 161  Q
    ||||| |||| |||| | ||||||||||| || |||||||| || |||||| | || |||||||| ||||||| |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 27446250 - 27446306
Alignment:
Q  129 atatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttaga 185  Q
    |||||| |||| ||||| ||||||| | ||||||||||| ||||| |||||||||||    
T  27446250 atatgatcatcgaatggatggtctctcgattccttgcagtgaagatgttttcttaga 27446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 38040236 - 38040051
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| |||||||||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||| |  | |||| |||    
T  38040236 caaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtca 38040137  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  38040136 agccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38040051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 38028921 - 38028736
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| |||||||||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||| |  | |||| |||    
T  38028921 caaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtca 38028822  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    |||||||||| |||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  38028821 agccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 38036948 - 38036763
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| |||||||||||| |||||||  |||||||  |||| ||  ||||||||| |||| | ||||||||| | || |||| |||    
T  38036948 caaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtca 38036849  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||| ||||||||||  ||||||||||||    
T  38036848 agccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattacttctc 38036763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 50904947 - 50904761
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||  || || ||||||| |||| | ||||||||||| || |||| ||     
T  50904947 caaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcg 50904848  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
    ||| |||||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||  |||| ||||||||    
T  50904847 agcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctcg 50904761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 38025030 - 38024844
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||| || |||||||||| |||| | || |||||| | ||||||| |||    
T  38025030 caaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtca 38024931  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
    ||| |||||| |||| |||||||| || ||||||||||| ||||| |||||||||| ||||||| ||||| | || |||||||||||    
T  38024930 agcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcg 38024844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 38031482 - 38031296
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||| || |||||||||| |||| | || |||||| | ||||||| |||    
T  38031482 caaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtca 38031383  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
    ||| |||||| |||| |||||||| || ||||||||||| ||||| |||||||||| ||||||| ||||| | || |||||||||||    
T  38031382 agcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcg 38031296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 55084781 - 55084957
Alignment:
Q  21 tcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaa 120  Q
    ||||||||| || ||||||||| |||||||| ||||||||||||| || || ||||||| |||| ||||||||||||| || |||| ||  || ||||||    
T  55084781 tcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaa 55084880  T
Q  121 caattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
     |||| ||||| || |||||||||||||| |||||||||||||||| |||||| ||||||||  |||||||||||||    
T  55084881 gaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcg 55084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 50909945 - 50910131
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| || ||||||||| |||||  | ||||||| ||||| || |||||||||| |||| | ||||||||| | || ||||||||    
T  50909945 caaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatca 50910044  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
    ||  |||||| |||| |||||||| |||||||||||||| |||||||||||||||| |||||| || |||||  | |||||||||||    
T  50910045 agtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattacttctcg 50910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 38033934 - 38033744
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| ||| |||||||| |||||||| ||||||| ||||| |  |||||||||| |||| | ||||||||| | || |||| |||    
T  38033934 caaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtca 38033835  T
Q  111 agccgaggaacaattcggatatgaccatccaat----gggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
    |||||||||| |||| |||||||||||||||||    ||| ||  |||||||||| |||| |||||| ||||||||  |||||||||||||    
T  38033834 agccgaggaagaatttggatatgaccatccaattaatgggcggcatcacaattccctgcacagaagatgttttcttgcatattacttctcg 38033744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 38043896 - 38044043
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgagg 118  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||  ||| | || |||||||| ||  ||| |||||| ||||    
T  38043896 tatcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagagg 38043995  T
Q  119 aacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    || |||| |||||||| ||||||||||| || ||||||||||||||||    
T  38043996 aagaatttggatatgatcatccaatgggcggcctcacaattccttgca 38044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 48840866 - 48840696
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||||||||||||| | ||||| |||||||| |||||| | ||||| ||||| ||  ||||||||| |||| | ||||||||||| || |||| | |    
T  48840866 caaagggatatcttgcattgtacgtcggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagt-a 48840768  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 182  Q
    ||  ||| || |||| |||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  48840767 agtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctt 48840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 50912024 - 50911853
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| |||||||| ||||| ||||||||  | |||||  ||||||||||||| |  |||||||||| |||| | ||||||||| | || |||| |||    
T  50912024 caaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtca 50911925  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 182  Q
    ||| |||||| |||| |||||||| || ||||||||||| || ||||||||||||| |||||  ||||||||    
T  50911924 agcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaaggtgttttctt 50911853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 50913489 - 50913549
Alignment:
Q  19 tatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttga 79  Q
    ||||||||||| || ||||||||| |||||||||||||  |||| |||||||||| |||||    
T  50913489 tatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttga 50913549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 38035165 - 38035212
Alignment:
Q  136 catccaatgggtggtctcacaattccttgcagagaagacgttttctta 183  Q
    |||||||||||||||||||||||||| ||||  |||||||| ||||||    
T  38035165 catccaatgggtggtctcacaattccctgcaaggaagacgtattctta 38035212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 21604909 - 21604724
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| ||||||||||| || || |||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||| |  | |||| |||    
T  21604909 caaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgttgagtca 21604810  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    || ||||||| |||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  21604809 agacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 21604724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 21607451 - 21607265
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||| || |||||||||| || | | || |||||| | ||||||| |||    
T  21607451 caaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtca 21607352  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 197  Q
    ||| |||||| |||| |||||||| || ||||||||||| |||||  ||||||||| ||||||  ||||| | || |||||||||||    
T  21607351 agcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagatattttcatggaaattacttctcg 21607265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 21634608 - 21634699
Alignment:
Q  91 tttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 182  Q
    |||||||| ||  ||| |||||| |||||| |||| |||||||| |||| |||||| ||  |||||||||||||||  ||||| ||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttctt 21634699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 3073554 - 3073722
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| | ||  ||| ||     
T  3073554 caaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcg 3073653  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgtttt 179  Q
     || |||||| |||||||||| || |||||||||||||| |||||||||||||||| |||||| |||||    
T  3073654 ggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttt 3073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 1754396 - 1754206
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    |||| |||||||| || ||||| |||||||| ||||||||| |||||||||||||  |||||||||||| |||||| ||||||||| ||||  | ||  |    
T  1754396 caaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaa 1754297  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttga 202  Q
    | | |||||||| || | |||||| ||||| |||||||||||||| |||||||| |||||| || ||||||||||||| |||||||| ||||    
T  1754296 atctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 1759253 - 1759422
Alignment:
Q  31 tacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattga----atcaagccgaggaacaattc 126  Q
    ||||| |||||| |||||||| |||||||||| ||  ||||||| || | |||| ||||||| |||||||| ||||    | ||||| |||||||||||     
T  1759253 tacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaattt 1759352  T
Q  127 ggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 196  Q
    | |||  |||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||    
T  1759353 gaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctc 1759422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 1756912 - 1756757
Alignment:
Q  11 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 110  Q
    ||||||| |||||||||||  | ||||||||| ||  |||| ||||||||||||||||||||||||||| |||| |||| |||||| | || |||| |||    
T  1756912 caaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtca 1756813  T
Q  111 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 166  Q
    ||| || ||| |||| |||||||| || || |||||||| ||||| ||||||||||    
T  1756812 agctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgca 1756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 1754719 - 1754835
Alignment:
Q  57 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 156  Q
    |||||||||||||||||||||||  ||| |||| ||||||   || |||| |||||| | |||| | || |||||||| |||||||||||||| |||||     
T  1754719 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcacc 1754818  T
Q  157 attccttgcagagaaga 173  Q
    |||| ||||| ||||||    
T  1754819 attctttgcacagaaga 1754835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University