View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_high_23 (Length: 242)
Name: NF6051_high_23
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 18129673 - 18129455
Alignment:
| Q |
4 |
tttgaaaagaagaaaggaaatcaccttcaaggaagaaaaaccagtaattttatcaattgaggaatgagaggagggtacagggaagcaagtgaggtggtgc |
103 |
Q |
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| T |
18129673 |
tttgaaaagaagaaaggaaat-accttcaaggaagaaaaaccaataattttatcaattgaggagtaagaggagggtacaggaaagcaagtgaggtggtgc |
18129575 |
T |
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| Q |
104 |
catttagtaacatcaaaacctctactcttgtcttttgtaaccaaacccaatcttagggttttagattgtatagcttctgagcatttcttgcatgtcgaac |
203 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
18129574 |
catttagtaacatcaaagcctctactcttgtcttttgtaaccaaacccaatcttagggttttagattgtatagcttctgagcatttcttgcacgttgaac |
18129475 |
T |
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| Q |
204 |
ggttcgacttcgcatactcc |
223 |
Q |
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|||| ||||| || |||||| |
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| T |
18129474 |
ggttagactttgcgtactcc |
18129455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 23887279 - 23887064
Alignment:
| Q |
8 |
aaaagaagaaaggaaatcaccttcaaggaagaaaaaccagtaattttatcaattgaggaatgagaggagggtacagggaagcaagtgaggtggtgccatt |
107 |
Q |
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|||||||||||| ||||||||||||| || ||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
23887279 |
aaaagaagaaagaaaatcaccttcaacgaggaaaagccggtaattttatcaattgaggagtgagaggagggtacagtgaagcaagtgaggtggtgccatt |
23887180 |
T |
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| Q |
108 |
tagtaacatcaaaacctctactcttgtcttttgtaaccaaacccaatcttagggttttagattgtatagcttctgagcatttcttgcatgtcgaacggtt |
207 |
Q |
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|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23887179 |
tagtaacatcgaagcctctactcttgtcttttgtaatcaaacccaatcttagggttttagattgtatagcttctgagcatttcttgcacgtcgaacggtt |
23887080 |
T |
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| Q |
208 |
cgacttcgcatactcc |
223 |
Q |
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||||| || |||||| |
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| T |
23887079 |
agactttgcgtactcc |
23887064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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