View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_high_4 (Length: 506)
Name: NF6051_high_4
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 24 - 502
Target Start/End: Complemental strand, 28366922 - 28366444
Alignment:
| Q |
24 |
caaccaatggtttgcacaatttgcacttctcaaattgtccttttactaaaatccctctaattaacactttgactgtttggaattgatagtactaaaccaa |
123 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28366922 |
caaccaatggtttgcacaatttgcacttttcaaattgtccttttactaaaatccctctaattaacactttgactgtttggaattgatagtactaaaccaa |
28366823 |
T |
|
| Q |
124 |
gacagcaacacgaatgaatgaaaaagatcacatattcacctctaagaaagtactaaaataaattgtggtttcatatgctggtattgactctgatgagatg |
223 |
Q |
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|||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28366822 |
gacagcaacacgaatgaaagaaaaatatcacatgttcacctctaagaaagtactaaaataaattgtggtttcatatgctggtattgactctgatgagatg |
28366723 |
T |
|
| Q |
224 |
attatgtttaggagtgaagatatttgtagtctatatattaagactcgcaactaataagacaatgtcctgattgagaatttttcgagcatcattaaacaaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28366722 |
attatgtttaggagtgaagatatttgtagtctatatattaagactcacaactaataagacaatgtcctgattgagaatttttcgagcatcattaaacaaa |
28366623 |
T |
|
| Q |
324 |
aataaaattctagcattatttgcggctggcttaagagaagtattatgattccagttaaggtactatagtttgagaactgatatttatttaattccaacag |
423 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28366622 |
aataaaattctagcattatttgtggctggcttaagagaagtattatgattccagttaaggtactatagtttgagaactgatatttatttaattccaacag |
28366523 |
T |
|
| Q |
424 |
tagtgatattacatttcatgaagcannnnnnnctccttgttggaagctcaaatcatgtatcgtatcctttcctttgctt |
502 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28366522 |
tagtgatattacatttcatgaagcatttttttctccttgttggaagctcaaatcatgtatcgtatcctttcctttgctt |
28366444 |
T |
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