View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_high_9 (Length: 367)
Name: NF6051_high_9
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 2429200 - 2429557
Alignment:
| Q |
1 |
attcaattggattgttgttgtgcactgtagccgtgctagtttcatcaaattggtggataaattgcttgctacagctttgttattcttttgatatattatt |
100 |
Q |
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| T |
2429200 |
attcaattggattgttgttgtgcactgtagccgtgctagtttcatcaaattggtggataaattgcttgctacagctttgttattcttttgatatattatt |
2429299 |
T |
|
| Q |
101 |
tttaaatttaatgtaggattttcataaccaagtggccatggttgatgaggactgtttaccaaaaattttcgatctgttcaacattcaacatcagggtatg |
200 |
Q |
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| T |
2429300 |
tttaaatttaatgtaggattttcataaccaagtggccatggttgatgaggactgtttaccaaaaattttcgatctgttcaacattcaacatcagggtatg |
2429399 |
T |
|
| Q |
201 |
cggaaagcagttcgtgggcttctcttcaattttgtcaacaataaggtatttttatatgactgaaaatttaaataaactatttttcaatttcaaagcaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429400 |
cggaaagcagttcgtgggcttctcttcaattttgtcaacaataaggtatttttatatgactgaaaatttaaataaactatttttcaatttcaaagcaagg |
2429499 |
T |
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| Q |
301 |
taaatgatggtcaaannnnnnnnctcttcccgtgtaggttgtaatatcccagttcatc |
358 |
Q |
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| T |
2429500 |
taaatgatggtcaaattttttttctcttcccgtgtaggttgtaatatcccagttcatc |
2429557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 322669 - 322718
Alignment:
| Q |
32 |
cgtgctagtttcatcaaattggtggataaattgcttgctacagctttgtt |
81 |
Q |
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| T |
322669 |
cgtgctagtttcatcaaattggtggataaattgcttgctgcagctttgtt |
322718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 18295096 - 18295034
Alignment:
| Q |
30 |
gccgtgctagtttcatcaaattggtggataaattgcttgctacagctttgttattcttttgat |
92 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
18295096 |
gccgtgctagtttattcaaattggtggatgaattggttgctgcagctttgttattcttttgat |
18295034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 1512344 - 1512315
Alignment:
| Q |
255 |
tatgactgaaaatttaaataaactattttt |
284 |
Q |
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| T |
1512344 |
tatgactgaaaatttaaataaactattttt |
1512315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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