View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_low_1 (Length: 790)
Name: NF6051_low_1
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 745; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 19 - 783
Target Start/End: Complemental strand, 47805298 - 47804534
Alignment:
| Q |
19 |
gctagaatccaaaacatacatctaacttaaacttgttatagatcagaaaaatttgaacatcagtggaaaaaataagatagatattaacatgcatagagtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805298 |
gctagaatccaaaacatacatctaacttaaacttgttatagatcagaaaaatttgaacatcagtggaaaaaataagatagatattaacatgcatagagtc |
47805199 |
T |
|
| Q |
119 |
aagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgccagcagggaaaaaagaagttaaaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805198 |
aagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgccagcagggaaaaaagaagttaaaatca |
47805099 |
T |
|
| Q |
219 |
tccgcaatatatttgagaaaaaagaaattcaccatatgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaat |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805098 |
tccgctatatatttgagaaaaaagaaattcaccatatgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaat |
47804999 |
T |
|
| Q |
319 |
cctcacaatcttgctgtaagtaaaacaacacaattaatacgtattccaggataataatattttcactgcaaattatttacacgtacctctgtgaaatctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804998 |
cctcacaatcttgctgtaagtaaaacaacacaattaatacgtattccaggataataatattttcactgcaaattatttacacgtacctctgtgaaatctt |
47804899 |
T |
|
| Q |
419 |
catcggagagctcagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaac |
518 |
Q |
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| T |
47804898 |
catcggagagctcagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaac |
47804799 |
T |
|
| Q |
519 |
gagagaaatgatcaatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttatta |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804798 |
aagagaaatgatcaatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttatta |
47804699 |
T |
|
| Q |
619 |
tacctatgactctcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagct |
718 |
Q |
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| T |
47804698 |
tacctatgactctcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagct |
47804599 |
T |
|
| Q |
719 |
ttcaggttgtttcgataactcgttcaccaagctttgttttaggtagataagcttgatattcttgg |
783 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47804598 |
ttcaggttgtttcgataactcgatcaccaagctttgttttaggtagataagcttgatattattgg |
47804534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 254 - 783
Target Start/End: Complemental strand, 47807624 - 47807096
Alignment:
| Q |
254 |
atgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaatcctcacaatcttgctgtaagtaaaacaacacaatt |
353 |
Q |
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|||||||||||||||||||||||||| ||| || | ||| ||||| |||||||||| ||| |||||||| || ||||||||| |||||||||| |||||| |
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| T |
47807624 |
atgtatcatacaacttacaacagttattttcggaaacaagccagtattcactttttgccgcaaatcctcgcattcttgctgtcagtaaaacaagacaatt |
47807525 |
T |
|
| Q |
354 |
aatacgtattccaggataataatattttcactgcaaattatttacacgtacctctgtgaaatcttcatcggagagctcagagatggaaatagctttaggc |
453 |
Q |
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|||| ||||||||||| |||| || ||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
47807524 |
aatatgtattccaggaaaata-tagtttcactgcaaattatttagatgtacctctgtgaaatcatcatcagagagctcagaaatggaaatagctttaggc |
47807426 |
T |
|
| Q |
454 |
atgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcatttaaagtacatacata |
553 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47807425 |
atgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcatttaaagtacatacata |
47807326 |
T |
|
| Q |
554 |
gaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagatggtatgaattcctt |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807325 |
gaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagatggtatgaattcctt |
47807226 |
T |
|
| Q |
654 |
agcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactcgttcaccaagcttt |
753 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
47807225 |
agcttatgatcattggaatctactctggctctaacaaaagttccaatcaccctactcgcaaagctttcaggctgtttcgataactcgaataccaagcttc |
47807126 |
T |
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| Q |
754 |
gttttaggtagataagcttgatattcttgg |
783 |
Q |
| |
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| ||||||||||||||||||||||| |||| |
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| T |
47807125 |
gctttaggtagataagcttgatatttttgg |
47807096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 47807961 - 47807812
Alignment:
| Q |
93 |
agatagatattaacatgcatagagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgcc |
192 |
Q |
| |
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|||||||||| |||| | | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
47807961 |
agatagatatgaacaagtaaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgca |
47807862 |
T |
|
| Q |
193 |
agcagggaaa-aaagaagttaaaatcatccgcaatatatttgagaaaaaa |
241 |
Q |
| |
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|||||||| |||| |||| |||| ||||| |||||||| || ||||| |
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| T |
47807861 |
gacagggaaacaaagtagttcaaattttccgctatatatttaagtaaaaa |
47807812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 43295751 - 43295801
Alignment:
| Q |
19 |
gctagaatccaaaacatacatctaacttaaacttgttatagatcagaaaaa |
69 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43295751 |
gctaggatccaaaacatacatctaacctaaacttgttatagatcagaaaaa |
43295801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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