View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6051_low_13 (Length: 346)

Name: NF6051_low_13
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6051_low_13
NF6051_low_13
[»] chr7 (2 HSPs)
chr7 (11-328)||(33866415-33866716)
chr7 (11-129)||(44573971-44574089)
[»] chr8 (1 HSPs)
chr8 (15-184)||(5771340-5771509)
[»] chr6 (1 HSPs)
chr6 (189-328)||(11075689-11075828)
[»] chr3 (2 HSPs)
chr3 (189-328)||(23216040-23216179)
chr3 (67-188)||(23214315-23214436)
[»] chr5 (7 HSPs)
chr5 (194-272)||(30340329-30340407)
chr5 (231-272)||(30746089-30746130)
chr5 (281-328)||(29588539-29588586)
chr5 (231-272)||(30432475-30432516)
chr5 (231-272)||(30479930-30479971)
chr5 (231-272)||(30680842-30680883)
chr5 (231-272)||(30716982-30717023)
[»] chr4 (1 HSPs)
chr4 (231-272)||(20303061-20303102)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 33866716 - 33866415
Alignment:
Q  11 catcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33866716 catcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttc 33866617  T
Q  111 atatacccatgatttccgctgtcacggcaagttagaataattttttattcatggttgcataattaaagacttgcatgatttccttaccttgaaaccagct 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  33866616 atatacccatgatttccgctgtcacggtaagttagaataattttttattcatggtt----------------gcatgatttccttaccttgaaaccagct 33866533  T
Q  211 ttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcactcctgtaactcgtgcatcattcattttgttggacatatttga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33866532 ttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcgctcctgtaactcgtgcatcattcattttgttggacatatttga 33866433  T
Q  311 ttcttgaatggggttctc 328  Q
    ||||||||||||||||||    
T  33866432 ttcttgaatggggttctc 33866415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 44574089 - 44573971
Alignment:
Q  11 catcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttc 110  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||  |||||| | |||    
T  44574089 catcatcatcatgtatgtcaagatggtttaatttgagagcagcggctgtttgcgtcgtctgctcactccggctagatggaaaacaagaactcctactttc 44573990  T
Q  111 atatacccatgatttccgc 129  Q
    || ||  ||||||||||||    
T  44573989 atctatacatgatttccgc 44573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 5771340 - 5771509
Alignment:
Q  15 atcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttcatat 114  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5771340 atcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctaggtggaaaacaatcactcctgccttcatat 5771439  T
Q  115 acccatgatttccgctgtcacggcaagttagaataattttttattcatggttgcataattaaagacttgc 184  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5771440 acacatgatttccgctgtcacggcaagttagaacaattttttattcatggttgcataattaaagacttgc 5771509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 11075828 - 11075689
Alignment:
Q  189 tttccttaccttgaaaccagctttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcactcctgtaactcgtgcatcat 288  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11075828 tttccttaccttgaaaccagctttaaccagcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcgctcctgtaactcgtgcatcat 11075729  T
Q  289 tcattttgttggacatatttgattcttgaatggggttctc 328  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11075728 tcattttgttggacatatttgattcttgaatggggttctc 11075689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 23216040 - 23216179
Alignment:
Q  189 tttccttaccttgaaaccagctttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcactcctgtaactcgtgcatcat 288  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23216040 tttccttaccttgaaaccagctttaaccagcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcgctcctgtaactcgtgcatcat 23216139  T
Q  289 tcattttgttggacatatttgattcttgaatggggttctc 328  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23216140 tcattttgttggacatatttgattcttgaatggggttctc 23216179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 23214315 - 23214436
Alignment:
Q  67 gtctgctcgctccggctagatggaaaacaatcactcctgccttcatatacccatgatttccgctgtcacggcaagttagaataattttttattcatggtt 166  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  23214315 gtctgcttgctccggctagatggaaaacaatcactcctgccttcatatacacatgatttccgctgtcacggcaagttagaacaattctttattcatggtt 23214414  T
Q  167 gcataattaaagacttgcatga 188  Q
    ||||||||||||||||||||||    
T  23214415 gcataattaaagacttgcatga 23214436  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 30340407 - 30340329
Alignment:
Q  194 ttaccttgaaaccagctttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||| ||||||| |  |||||| ||| ||  ||| |||||||||||||||| | |||||||||||||||||||||||    
T  30340407 ttacctggaaaccaacgataaccagcaaagagatatcagttaaaggaaattgaaatcttcagcagcaaacttcactcct 30340329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 30746089 - 30746130
Alignment:
Q  231 agttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  30746089 agttaaaggaaattgatatcttcagcagcaaacttcattcct 30746130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 29588539 - 29588586
Alignment:
Q  281 tgcatcattcattttgttggacatatttgattcttgaatggggttctc 328  Q
    |||||||||||| ||| |||||||||||||||||| ||||| ||||||    
T  29588539 tgcatcattcatgttgctggacatatttgattcttcaatggagttctc 29588586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 30432475 - 30432516
Alignment:
Q  231 agttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  30432475 agttaaaggaaattgaaatcttcagcagcaaacttcattcct 30432516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 30479930 - 30479971
Alignment:
Q  231 agttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||||||||||||| | |||||||||||||| ||||||||    
T  30479930 agttaaaggaaattgaaatcttcagcagcaaacatcactcct 30479971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 30680883 - 30680842
Alignment:
Q  231 agttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  30680883 agttaaaggaaattgaaatcttcagcagcaaacttcattcct 30680842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 30717023 - 30716982
Alignment:
Q  231 agttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  30717023 agttaaaggaaattgaaatcttcagcagcaaacttcattcct 30716982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 20303102 - 20303061
Alignment:
Q  231 agttaaaggaaattgataacttcagcagcaaacttcactcct 272  Q
    |||||||||||||||| | |||||||||||| ||||||||||    
T  20303102 agttaaaggaaattgaaatcttcagcagcaaccttcactcct 20303061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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