View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_low_17 (Length: 268)
Name: NF6051_low_17
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33866693 - 33866924
Alignment:
| Q |
1 |
attttgacatacatcatgatgatgcacaatcataaaagtttgatttttgtttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactg |
100 |
Q |
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| T |
33866693 |
attttgacatacatcatgatgatgcagaatcataaaagtttgatttgtatttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactg |
33866792 |
T |
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| Q |
101 |
ctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattctta |
200 |
Q |
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| T |
33866793 |
ctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatctttaataatttagttgtgtattctta |
33866892 |
T |
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| Q |
201 |
tctttcttaaattggtgatttacatggtttaa |
232 |
Q |
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| T |
33866893 |
tctttcttaaattggtgatttacatgttttaa |
33866924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 5771356 - 5771128
Alignment:
| Q |
4 |
ttgacatacatcatgatgatgcacaatcataaaagtttgatttttgtttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctg |
103 |
Q |
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| T |
5771356 |
ttgacatacatcatgattatgcagaatcataaaagtttgatttgtatttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctg |
5771257 |
T |
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| Q |
104 |
acatgcatagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatct |
203 |
Q |
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| T |
5771256 |
acatgcatagaggaggtaaatccttcaatgagaggtaacgtttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatct |
5771157 |
T |
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| Q |
204 |
ttcttaaattggtgatttacatggtttaa |
232 |
Q |
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| T |
5771156 |
ttcttaaattggtgatttacatgttttaa |
5771128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 5894561 - 5894501
Alignment:
| Q |
174 |
cttcaataatttagttgtgtattctta--tctttcttaaattggtgatttacatggtttaa |
232 |
Q |
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| T |
5894561 |
cttcaataatttaggtgtgtattcttatctctctcttaaattggtgatatacacggtttaa |
5894501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 5894614 - 5894555
Alignment:
| Q |
73 |
tcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaat |
132 |
Q |
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| T |
5894614 |
tcaagaaaagaatgtgcattaccaatcgctaaccaacataaaggaggtaaatccttcaat |
5894555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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