View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6051_low_18 (Length: 259)
Name: NF6051_low_18
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34063814 - 34063569
Alignment:
| Q |
1 |
aacatcatcaatgtctgttcttcttccaacaacttcaaaacctcttttttcaattcgacccaacaacgtacatatgaacaagttgaagatgaaaacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34063814 |
aacatcatcaatgtctgttcttcttccaacaacttcaaaacctcttttttcaattcgacccaacaacgtacatatgaacaagttgaagatgaaaacaaac |
34063715 |
T |
|
| Q |
101 |
cggtttactgtttctgctgttgttgctgaagatgctgctgctgtttccctccaacctccacctcaatctcgggttctctctctttctatgctcttaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34063714 |
cggtttactgtttctgctgttgttgctgaagatgctgctgctgtttccctccaacctccacctcaatctcaggttctctctctttctatgctcttaattg |
34063615 |
T |
|
| Q |
201 |
tgatttttgtttcaaatggggtgcttaaattgttattgttgtaatt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34063614 |
tgatttttgtttcaaatggggtgcttaaattgttattgttgtaatt |
34063569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University