View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_low_2 (Length: 720)
Name: NF6051_low_2
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Original strand, 33866693 - 33867395
Alignment:
| Q |
1 |
attttgacatacatcatgatgatgcacaatcataaaagtttgatttttgtttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33866693 |
attttgacatacatcatgatgatgcagaatcataaaagtttgatttgtatttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactg |
33866792 |
T |
|
| Q |
101 |
ctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattctta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33866793 |
ctgacatgcatagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatctttaataatttagttgtgtattctta |
33866892 |
T |
|
| Q |
201 |
tctttcttaaattggtgatttacatggtttaannnnnnnn-catccattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgc |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33866893 |
tctttcttaaattggtgatttacatgttttaatttttttttcattcattatgagtatagtgtagtattttggttcattggcattgaaataataatcttgc |
33866992 |
T |
|
| Q |
300 |
tgcatcataaataacataaagttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnn |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
33866993 |
tgcatcataaataacataaagttgctcatgtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttt- |
33867091 |
T |
|
| Q |
400 |
atctcttttaccatatgttctgtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
33867092 |
atctcttttaccatatgttctgtaattatgtacacaaattggtgttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttt |
33867191 |
T |
|
| Q |
500 |
tnnnnnnntatgcagaggctaattgtggttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagat |
599 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33867192 |
taaaaaaatatgcagagtctaattgtggttcatttgttttcctgtttatacatcaacgcatgcctgatccatttgttttcattgcttttaggagggagat |
33867291 |
T |
|
| Q |
600 |
agaataaatattagcagggttcaaagttcatgttaatagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgt |
699 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867292 |
agaataaatattagcagggttcaaagttcatgttaatagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgt |
33867391 |
T |
|
| Q |
700 |
tgtc |
703 |
Q |
| |
|
|||| |
|
|
| T |
33867392 |
tgtc |
33867395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 640 - 704
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
640 |
actaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
704 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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|
| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 4 - 703
Target Start/End: Complemental strand, 5771356 - 5770654
Alignment:
| Q |
4 |
ttgacatacatcatgatgatgcacaatcataaaagtttgatttttgtttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctg |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5771356 |
ttgacatacatcatgattatgcagaatcataaaagtttgatttgtatttcacttaagagttcacttctctcaagaaaagaatgtgcattaccaactgctg |
5771257 |
T |
|
| Q |
104 |
acatgcatagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatct |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5771256 |
acatgcatagaggaggtaaatccttcaatgagaggtaacgtttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatct |
5771157 |
T |
|
| Q |
204 |
ttcttaaattggtgatttacatggtttaannnnnnnn-catccattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgc |
302 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5771156 |
ttcttaaattggtgatttacatgttttaatttttttttcattcattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgc |
5771057 |
T |
|
| Q |
303 |
atcataaataacataaagttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnn--a |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
5771056 |
atcataaataacataaagttgctcatgtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagtttttttttttta |
5770957 |
T |
|
| Q |
401 |
tctcttttaccatatgttctgtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactcttttt |
500 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
5770956 |
tctcttttaccacatgttctgtaattatgtacacaaattggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactcttttt |
5770857 |
T |
|
| Q |
501 |
nnnnnnntatgcagaggctaattgtggttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagata |
600 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5770856 |
aaaaaaatatgcagagactaattgtggttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagata |
5770757 |
T |
|
| Q |
601 |
gaataaatattagcagggttcaaagttcatgttaatagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgtt |
700 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5770756 |
gaaaaaatattagcagggttcaaagttcatgttaatagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgtt |
5770657 |
T |
|
| Q |
701 |
gtc |
703 |
Q |
| |
|
||| |
|
|
| T |
5770656 |
gtc |
5770654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 5894466 - 5894390
Alignment:
| Q |
254 |
tatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
5894466 |
tatagtgtagtattttggttcattggcattgagataataaccttgctccatcataaataacataaacttgctcatgt |
5894390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 321 - 496
Target Start/End: Complemental strand, 5894221 - 5894049
Alignment:
| Q |
321 |
ttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttttaccatatgttct |
420 |
Q |
| |
|
||||||||||| || ||| ||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | |
|
|
| T |
5894221 |
ttgctcatgtattcactagaaaagtctgaattatgatgtatctttctgtctcttttgataattggaa---actctttgtatctcttttaccacatgtttt |
5894125 |
T |
|
| Q |
421 |
gtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactct |
496 |
Q |
| |
|
||||||||| ||| ||||| ||||||| |||||||||||||| | || ||||| | ||||||||||| ||||||| |
|
|
| T |
5894124 |
gtaattatgcacacaaattagggttaatttgtgcataaaagttgctgacgtatgctgtatctttcttttttactct |
5894049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 5894561 - 5894501
Alignment:
| Q |
174 |
cttcaataatttagttgtgtattctta--tctttcttaaattggtgatttacatggtttaa |
232 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||||| |
|
|
| T |
5894561 |
cttcaataatttaggtgtgtattcttatctctctcttaaattggtgatatacacggtttaa |
5894501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 5894614 - 5894555
Alignment:
| Q |
73 |
tcaagaaaagaatgtgcattaccaactgctgacatgcatagaggaggtaaatccttcaat |
132 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| |
|
|
| T |
5894614 |
tcaagaaaagaatgtgcattaccaatcgctaaccaacataaaggaggtaaatccttcaat |
5894555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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