View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6051_low_22 (Length: 242)

Name: NF6051_low_22
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6051_low_22
NF6051_low_22
[»] chr8 (3 HSPs)
chr8 (1-226)||(32288670-32288895)
chr8 (97-125)||(23996639-23996667)
chr8 (97-137)||(41606903-41606943)
[»] chr1 (2 HSPs)
chr1 (99-147)||(34290268-34290316)
chr1 (97-137)||(10199408-10199448)
[»] scaffold0584 (1 HSPs)
scaffold0584 (97-140)||(1330-1373)
[»] scaffold0446 (1 HSPs)
scaffold0446 (97-140)||(5456-5499)
[»] chr4 (3 HSPs)
chr4 (97-140)||(33534166-33534209)
chr4 (97-140)||(56055780-56055823)
chr4 (14-66)||(30581727-30581779)
[»] chr2 (3 HSPs)
chr2 (97-136)||(39236496-39236535)
chr2 (97-125)||(11063518-11063546)
chr2 (97-137)||(41809245-41809285)
[»] chr6 (2 HSPs)
chr6 (97-134)||(31420975-31421012)
chr6 (14-58)||(3785758-3785802)
[»] chr5 (1 HSPs)
chr5 (97-137)||(2568688-2568728)
[»] chr3 (3 HSPs)
chr3 (97-137)||(20195033-20195072)
chr3 (97-137)||(24785235-24785275)
chr3 (97-137)||(51206498-51206538)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32288670 - 32288895
Alignment:
Q  1 ttcattactaaacataaaatcaagttaaactgtcttcgtataaaccataagctgttttaataagttgttttcagcttatttttcagaagctctcatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32288670 ttcattactaaacataaaatcaagttaaactgtcttcgtataaaccataagctgttttaataagttgttttcagcttatttttcagaagctctcatagct 32288769  T
Q  101 tatgaaaataagctaaaaacaacttttgaatatgtcacaagatttttcataaatctttccaaacagttttaccaatttgtatgccaatagataagctcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32288770 tatgaaaataagctaaaaacaacttttgaatatgtcacaagatttttcataaatctttccaaacagttttaccaatttgtatgccaatagataagctcac 32288869  T
Q  201 atagcaaattcaaacatgcccttcgt 226  Q
    |||| |||||||||||||||||||||    
T  32288870 atagtaaattcaaacatgcccttcgt 32288895  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 23996667 - 23996639
Alignment:
Q  97 agcttatgaaaataagctaaaaacaactt 125  Q
    |||||||||||||||||||||||||||||    
T  23996667 agcttatgaaaataagctaaaaacaactt 23996639  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 41606943 - 41606903
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||||||| ||||||||| ||||||||||||||| ||||||    
T  41606943 agcttatggaaataagctgaaaacaacttttgaacatgtca 41606903  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 34290268 - 34290316
Alignment:
Q  99 cttatgaaaataagctaaaaacaacttttgaatatgtcacaagattttt 147  Q
    |||||||||||||||| |||||||||| ||||||||||| ||| |||||    
T  34290268 cttatgaaaataagctgaaaacaacttatgaatatgtcataagcttttt 34290316  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 10199448 - 10199408
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||||||||||||||||| |||||||||| |||| ||||||    
T  10199448 agcttatgaaaataagctgaaaacaacttatgaacatgtca 10199408  T

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Target: scaffold0584 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0584
Description:

Target: scaffold0584; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 1373 - 1330
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtcacaa 140  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  1373 agcttatgaaaataagataaaaacaacttatgaatatgttacaa 1330  T

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Target: scaffold0446 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 5499 - 5456
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtcacaa 140  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  5499 agcttatgaaaataagataaaaacaacttatgaatatgttacaa 5456  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 33534209 - 33534166
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtcacaa 140  Q
    |||||||||||||||||| |||||||||| || |||||||||||    
T  33534209 agcttatgaaaataagctgaaaacaacttatggatatgtcacaa 33534166  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 56055780 - 56055823
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtcacaa 140  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  56055780 agcttatgaaaataagataaaaacaacttatgaatatgttacaa 56055823  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 30581779 - 30581727
Alignment:
Q  14 ataaaatcaagttaaactgtcttcgtataaaccataagctgttttaataagtt 66  Q
    ||||||| |||| ||||| | ||||||||| | ||||||||||||||||||||    
T  30581779 ataaaatgaagtcaaactattttcgtataagctataagctgttttaataagtt 30581727  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 39236535 - 39236496
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtc 136  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  39236535 agcttataaaaataagctaaaaacaacttatgaatatgtc 39236496  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 11063518 - 11063546
Alignment:
Q  97 agcttatgaaaataagctaaaaacaactt 125  Q
    |||||||||||||||||||||||||||||    
T  11063518 agcttatgaaaataagctaaaaacaactt 11063546  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 41809285 - 41809245
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||||||| |||||||||||||||||||| |||| ||||||    
T  41809285 agcttatggaaataagctaaaaacaacttatgaacatgtca 41809245  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 31420975 - 31421012
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatg 134  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  31420975 agcttatgaaaataagctgaaaacaacttatgaatatg 31421012  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 3785802 - 3785758
Alignment:
Q  14 ataaaatcaagttaaactgtcttcgtataaaccataagctgtttt 58  Q
    ||||||| |||||||||||| ||||||||| | ||||||||||||    
T  3785802 ataaaataaagttaaactgttttcgtataagctataagctgtttt 3785758  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 2568688 - 2568728
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||| |||||||||||||||||| ||||| |||||||||||    
T  2568688 agctaatgaaaataagctaaaaataacttatgaatatgtca 2568728  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 20195072 - 20195033
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  20195072 agcttatgaaaa-aagctgaaaacaacttttgaatatgtca 20195033  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 24785235 - 24785275
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||||||| |||||||||||||||||||| |||| ||||||    
T  24785235 agcttatgtaaataagctaaaaacaacttatgaacatgtca 24785275  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 51206538 - 51206498
Alignment:
Q  97 agcttatgaaaataagctaaaaacaacttttgaatatgtca 137  Q
    |||||||||||||||||| ||||||||||||| ||| ||||    
T  51206538 agcttatgaaaataagctgaaaacaacttttggataggtca 51206498  T

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