View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_low_28 (Length: 218)
Name: NF6051_low_28
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 2323757 - 2323933
Alignment:
| Q |
14 |
ataatactgctttaaacaaagagacttgattaagatggattaaaaaac-atgcaattggacatgaaaaccctttatgctatagctagtggattctattaa |
112 |
Q |
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| T |
2323757 |
ataatactgctttaaacaaagagacttgattaagatggattaaaaaactatgcaattggacatgaaaaccctttatgctatagctagtggattctattaa |
2323856 |
T |
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| Q |
113 |
caaatacaatttggttcaattggttgtatttcgctcgccatctttaagaaatttttctagctcgagcgaaaattaaaagcataaaaa |
199 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323857 |
caaata----------caattggttgtatttcgctcgccacctttaagaaatttttctagctcgagcgaaaattaaaagcataaaaa |
2323933 |
T |
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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 2344858 - 2344895
Alignment:
| Q |
100 |
tggattctattaacaaatacaatttggttcaattggtt |
137 |
Q |
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| T |
2344858 |
tggattctattaacaaatacaatttggttcaattggtt |
2344895 |
T |
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