View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6051_low_5 (Length: 433)
Name: NF6051_low_5
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6051_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 31055445 - 31055032
Alignment:
| Q |
1 |
tgatcgattctcatattcattccttcataatagtctctaatagcatgataaagaggttgacattcaccagtatctgttatagcagattccatgcattcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31055445 |
tgatcgattctcatattcattccttcataatagtctctaatagcatgataaagaggttgacattcaccagtatctgttatagcagattccatgcattcaa |
31055346 |
T |
|
| Q |
101 |
agcacaaaattcgttcatcgtccaatctaaagtatctttcgccccgagacttcaaggagaaggtaattaaaaatataaatatcagaaaagagaaacatat |
200 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31055345 |
agcacaaaatccgtccatcgtccaatctaaagtatctttcgccccgagacttcaaggagaaggtaattaaaaatataaatatcagaaaagagaaacatat |
31055246 |
T |
|
| Q |
201 |
atatagcaaaatgttatttccacaatcttaaaaaggagatnnnnnnnntatattagtacctctaatctttcacagctacaacagcgagatgtattatcat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31055245 |
atatagcaaaatgttatttccatgatcttaaaaaggaga--aaaaaaaaatattagtacctctaatctttcacagctacaacagcgagatgtattatcat |
31055148 |
T |
|
| Q |
301 |
gttcatgagacggacagtatttttggttccaataggggtgacacctatactcaatcaaaccagaaccatttataggtatctgcaagtgaaacaaattaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31055147 |
gttcatgagacggacagtatttttggttccaataggggtgacacctatactcaatcaaaccagaaccatttataggtatctgcaagtgaaacaaattaac |
31055048 |
T |
|
| Q |
401 |
atgtattatagattat |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
31055047 |
atgtattatagattat |
31055032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 387
Target Start/End: Original strand, 34743454 - 34743589
Alignment:
| Q |
252 |
attagtacctctaatctttcacagctacaacagcgagatgtattatcatgttcatgagacggacagtatttttggttccaataggggtgacacctatact |
351 |
Q |
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|
||||||||||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||| ||||| || |||||| |||| ||||||| || ||||||| |
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| T |
34743454 |
attagtacctctaatctttcacaactacagcagcgagctgtgttatcatattcatgagatggacaatacttttgggaccaaaaggggtggcatctatact |
34743553 |
T |
|
| Q |
352 |
caatcaaaccagaaccatttataggtatctgcaagt |
387 |
Q |
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|||||||||||| | |||||||||| ||||| |||| |
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| T |
34743554 |
caatcaaaccagcagcatttataggaatctgaaagt |
34743589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34743199 - 34743305
Alignment:
| Q |
1 |
tgatcgattctcatattcattccttcataatagtctctaatagcatgataaagaggttgacattcaccagtatctgttatagcagattccatgcattcaa |
100 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||| || | ||| || ||||| ||||| ||||||||||| ||||||||||||||||||| || | |
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| T |
34743199 |
tgatcaattctcatatgcattccttcataataatctctgattgaatggtatagaggctgacagtcaccagtatccattatagcagattccatgcactcta |
34743298 |
T |
|
| Q |
101 |
agcacaa |
107 |
Q |
| |
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||||||| |
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|
| T |
34743299 |
agcacaa |
34743305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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