View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6051_low_6 (Length: 418)

Name: NF6051_low_6
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6051_low_6
NF6051_low_6
[»] chr2 (10 HSPs)
chr2 (84-291)||(32627748-32627955)
chr2 (338-401)||(32627649-32627712)
chr2 (341-399)||(15250163-15250221)
chr2 (347-401)||(23357007-23357061)
chr2 (353-399)||(4038365-4038411)
chr2 (353-399)||(8070645-8070691)
chr2 (341-399)||(42132725-42132783)
chr2 (341-399)||(43135675-43135733)
chr2 (347-399)||(24019950-24020002)
chr2 (120-164)||(32611347-32611391)
[»] chr6 (8 HSPs)
chr6 (341-401)||(15131412-15131472)
chr6 (348-401)||(32563270-32563323)
chr6 (347-401)||(20563460-20563514)
chr6 (341-399)||(21894312-21894370)
chr6 (347-401)||(23648260-23648314)
chr6 (340-377)||(14355874-14355911)
chr6 (348-401)||(26561417-26561470)
chr6 (353-401)||(34232941-34232989)
[»] chr8 (11 HSPs)
chr8 (341-399)||(35243380-35243438)
chr8 (341-399)||(38780721-38780779)
chr8 (341-399)||(13970035-13970093)
chr8 (341-399)||(39746967-39747025)
chr8 (348-399)||(29189754-29189805)
chr8 (341-399)||(16422889-16422947)
chr8 (341-399)||(22877953-22878011)
chr8 (353-399)||(36590209-36590255)
chr8 (345-399)||(37560557-37560611)
chr8 (353-398)||(9211058-9211103)
chr8 (341-401)||(18410884-18410944)
[»] chr5 (12 HSPs)
chr5 (347-401)||(13921791-13921845)
chr5 (344-401)||(27005871-27005928)
chr5 (348-399)||(11100781-11100832)
chr5 (341-399)||(5381963-5382021)
chr5 (353-399)||(12363631-12363677)
chr5 (354-399)||(2497636-2497681)
chr5 (354-399)||(11663910-11663955)
chr5 (348-401)||(13936259-13936312)
chr5 (348-401)||(32321679-32321732)
chr5 (353-401)||(4379330-4379378)
chr5 (353-401)||(6603927-6603975)
chr5 (353-401)||(7651712-7651760)
[»] chr4 (22 HSPs)
chr4 (341-399)||(38048906-38048964)
chr4 (347-401)||(43078223-43078277)
chr4 (341-401)||(42085749-42085809)
chr4 (341-399)||(53273175-53273233)
chr4 (341-401)||(11050374-11050434)
chr4 (353-401)||(39068895-39068943)
chr4 (348-399)||(48056635-48056686)
chr4 (353-399)||(9043639-9043685)
chr4 (353-399)||(18582913-18582959)
chr4 (341-399)||(22430692-22430750)
chr4 (353-399)||(26826590-26826636)
chr4 (341-399)||(29413588-29413646)
chr4 (341-399)||(30366175-30366233)
chr4 (353-399)||(55358367-55358413)
chr4 (353-399)||(55829073-55829119)
chr4 (354-399)||(50502310-50502355)
chr4 (353-401)||(4355619-4355667)
chr4 (353-401)||(20148829-20148877)
chr4 (347-399)||(21633845-21633897)
chr4 (353-401)||(33115044-33115092)
chr4 (347-399)||(36196937-36196989)
chr4 (353-401)||(42116965-42117013)
[»] chr3 (15 HSPs)
chr3 (354-399)||(20450532-20450577)
chr3 (345-401)||(25146378-25146434)
chr3 (341-399)||(42497055-42497113)
chr3 (341-401)||(51003308-51003368)
chr3 (341-399)||(29718234-29718292)
chr3 (341-399)||(33897926-33897984)
chr3 (341-399)||(39876675-39876733)
chr3 (341-399)||(44947234-44947292)
chr3 (348-401)||(29203058-29203111)
chr3 (346-399)||(45693419-45693472)
chr3 (353-401)||(8872946-8872994)
chr3 (341-401)||(24350296-24350356)
chr3 (347-399)||(37489957-37490009)
chr3 (353-401)||(46972106-46972154)
chr3 (353-401)||(49853074-49853122)
[»] chr1 (18 HSPs)
chr1 (341-401)||(46056437-46056497)
chr1 (353-399)||(32368352-32368398)
chr1 (347-401)||(52703122-52703176)
chr1 (348-400)||(25134919-25134971)
chr1 (341-401)||(44718982-44719042)
chr1 (353-399)||(5697553-5697599)
chr1 (341-399)||(7710967-7711025)
chr1 (341-399)||(7781177-7781235)
chr1 (353-399)||(15348900-15348946)
chr1 (353-399)||(29704097-29704143)
chr1 (341-399)||(30721636-30721694)
chr1 (348-401)||(912724-912777)
chr1 (348-401)||(27659376-27659429)
chr1 (353-401)||(3270734-3270782)
chr1 (347-399)||(13570806-13570858)
chr1 (353-401)||(25602062-25602110)
chr1 (353-401)||(26843827-26843875)
chr1 (347-399)||(46088013-46088065)
[»] scaffold0043 (1 HSPs)
scaffold0043 (341-400)||(59205-59264)
[»] scaffold0016 (1 HSPs)
scaffold0016 (345-401)||(84320-84376)
[»] chr7 (7 HSPs)
chr7 (348-387)||(33609164-33609203)
chr7 (353-399)||(36407301-36407347)
chr7 (353-399)||(40258930-40258976)
chr7 (353-401)||(12345101-12345149)
chr7 (339-399)||(17844603-17844663)
chr7 (353-401)||(21254731-21254779)
chr7 (353-401)||(33203702-33203750)
[»] scaffold0116 (1 HSPs)
scaffold0116 (353-399)||(22667-22713)
[»] scaffold0362 (1 HSPs)
scaffold0362 (359-399)||(5486-5526)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 84 - 291
Target Start/End: Complemental strand, 32627955 - 32627748
Alignment:
Q  84 accctaaaattaaggaccatacaaatccatcagaatataaatacattttattaaatctggcataagattagagaagtaatatagtattgaatattgacta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32627955 accctaaaattaaggaccatacaaatccatcagaatataaatacatgttattaaaactggcataagattagagaagtaatatagtattgaatattgacta 32627856  T
Q  184 aattgctggattatctatggcacgtccaattagagcgtggcacagtagttgattagttaatgttcgtgtggaaactcatagtttaagggtcagtttggta 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  32627855 aattgctggattatctatggcacgtccaattagagcgtggcacagtagttgattagttaatgctcgtgtgaaaactcatagtttaagggtctgtttggta 32627756  T
Q  284 agacatac 291  Q
    ||||||||    
T  32627755 agacatac 32627748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 32627712 - 32627649
Alignment:
Q  338 ttatttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  32627712 ttatttcatcacgaacttataatttatttcacgagcttatatcttatttttaagacactatttc 32627649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 15250163 - 15250221
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||| ||||||||||  |||||||||||||||||||    
T  15250163 tttcaccacgagcttatagcttatttctcgagcttataagttatttttcagacgctatt 15250221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 23357061 - 23357007
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| |||||| ||||||||||||||||||||  ||||||||||| ||||||||    
T  23357061 cacgagcttatagcttatttcacgagcttatatgctatttttcagaagctatttc 23357007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 4038411 - 4038365
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||| |||||||||||||||||||  |||||||||||| ||||||    
T  4038411 cttatagcttatttcacgagcttataagttatttttcagaagctatt 4038365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 8070691 - 8070645
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  8070691 cttataacttatttcacgagcttataagctatttttcagaagctatt 8070645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 42132725 - 42132783
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  42132725 tttcatcatgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 42132783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 43135675 - 43135733
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  43135675 tttcatcatgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 43135733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 24019950 - 24020002
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  24019950 cacgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 24020002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 32611391 - 32611347
Alignment:
Q  120 ataaatacattttattaaatctggcataagattagagaagtaata 164  Q
    |||||||||| |||||||||||| ||| ||||| |||||||||||    
T  32611391 ataaatacatattattaaatctgacatgagattggagaagtaata 32611347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 15131472 - 15131412
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||||||||| |||||||||||||| || | |||||| ||||||||||||||||||||||    
T  15131472 tttcatcacgagcttataacttattttactaacttatagcttatttttcagacgctatttc 15131412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 32563323 - 32563270
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||| ||||||||||||||||  ||||||||  |||||||||||||||||||||    
T  32563323 acgagcttataacttatttcagaagcttataatttatttttcagacgctatttc 32563270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 20563460 - 20563514
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  20563460 cacgagcttatagcttatttcacgagcttataaactatttttcagaagctatttc 20563514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 21894312 - 21894370
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||  ||||| |||||||||||||||||||   ||||||||||||||||||    
T  21894312 tttcaccacgagattatagcttatttcacgagcttataagctatttttcagacgctatt 21894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 23648260 - 23648314
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  23648260 cacgagcttatagcttatttcacgagcttataagctatttttcagaagctatttc 23648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 14355911 - 14355874
Alignment:
Q  340 atttcatcacgaacttataacttatttcacgagcttat 377  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  14355911 atttcatcacgagcttataacttatttcacaagcttat 14355874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 26561417 - 26561470
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||| ||||||  |||||||| ||||||||| ||||||||||| ||||||||||    
T  26561417 acgagcttatagtttatttcaggagcttataacttatttttcaaacgctatttc 26561470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 34232989 - 34232941
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  34232989 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 34232941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 35243438 - 35243380
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||||||||||||||  |||||||||||||||||||    
T  35243438 tttcaccacgagcttatatcttatttcacgagcttataagttatttttcagacgctatt 35243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 38780721 - 38780779
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||||||||||||||||| |||||||||||   ||||||||||||||||||    
T  38780721 tttcaccacgaacttataacttattttacgagcttataaactatttttcagacgctatt 38780779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 13970035 - 13970093
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||||||||||||||   ||||||||||||||||||    
T  13970035 tttcaccacgagcttatagcttatttcacgagcttataagctatttttcagacgctatt 13970093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 39747025 - 39746967
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  39747025 tttcaccacgagcttataacttatttcacgagcttataagctatttttcagatgctatt 39746967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 29189805 - 29189754
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||| |||||| |||||||||||||||||||| |||||||| ||| ||||||    
T  29189805 acgagcttatagcttatttcacgagcttatatgttatttttaagaagctatt 29189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 16422889 - 16422947
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  16422889 tttcatcatgagcttatagcttatttcacgagcttataaactatttttcagaagctatt 16422947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 22878011 - 22877953
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| || ||||||||| |||||||||||||||||||   ||||||||||| ||||||    
T  22878011 tttcaccatgaacttatagcttatttcacgagcttataagctatttttcagaagctatt 22877953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 36590209 - 36590255
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  36590209 cttataacttatttcacgagcttataagctatttttcagaagctatt 36590255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 37560611 - 37560557
Alignment:
Q  345 atcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||| ||||||||| |||||||||||||||||||   ||||||||||| ||||||    
T  37560611 atcatgaacttatagcttatttcacgagcttataagctatttttcagaagctatt 37560557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 9211058 - 9211103
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctat 398  Q
    ||||||||||||||||||||||||||   ||||||||||| |||||    
T  9211058 cttataacttatttcacgagcttataaactatttttcagaagctat 9211103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 18410884 - 18410944
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||||||||| ||||||  | |||||||||||||||| |||||||| || | ||||||||    
T  18410884 tttcatcacgagcttatatttaatttcacgagcttatagcttattttccatatgctatttc 18410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 13921791 - 13921845
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||||||||||||||||||||||||||| |   ||||||||||||||||||||    
T  13921791 cacgaacttataacttatttcacgagcttaaaagctatttttcagacgctatttc 13921845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 27005928 - 27005871
Alignment:
Q  344 catcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||| || ||||||||||    
T  27005928 catcacgaacttatagcttatttcaagagcttataacttattttccaaacgctatttc 27005871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 11100832 - 11100781
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||| |||||| |||||||||||||||||||   ||||||||||||||||||    
T  11100832 acgagcttatagcttatttcacgagcttataagctatttttcagacgctatt 11100781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 5382021 - 5381963
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||||||||||||| |||||||||   ||||||||||| ||||||    
T  5382021 tttcaccacgagcttataacttatttcatgagcttataagctatttttcagaagctatt 5381963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 12363677 - 12363631
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  12363677 cttataacttatttcacgagcttataagctatttttcagaagctatt 12363631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 2497636 - 2497681
Alignment:
Q  354 ttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||||||||||||||||||||  |||||||||| | ||||||    
T  2497636 ttataacttatttcacgagcttataagttatttttcaaaagctatt 2497681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 11663955 - 11663910
Alignment:
Q  354 ttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||||||||||||||||  |||||||||||| ||||||    
T  11663955 ttatagcttatttcacgagcttataagttatttttcagaagctatt 11663910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 13936259 - 13936312
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||| |||||| ||||||||| |||||||||   ||||||||||||||||||||    
T  13936259 acgagcttatagcttatttcatgagcttataagctatttttcagacgctatttc 13936312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 32321732 - 32321679
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||| |||||| |||||||||||| |||| | |||||||||||||| |||||||    
T  32321732 acgagcttatagcttatttcacgaacttacaacttatttttcagactctatttc 32321679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 4379330 - 4379378
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  4379330 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 4379378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 6603975 - 6603927
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  6603975 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 6603927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 7651712 - 7651760
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  7651712 cttatagcttatttcacgagcttataatctatttttcagaagctatttc 7651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 38048964 - 38048906
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||| |||||||||||| |||||   ||||||||||||||||||    
T  38048964 tttcatcacgaacttataatttatttcacgagtttataaactatttttcagacgctatt 38048906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 43078277 - 43078223
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  43078277 cacgagcttataacttatttcacgagcttataaactatttttcagacgctatttc 43078223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 42085809 - 42085749
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| |||||||||||| |||||||||||||||||||   | ||||||||||||||||||    
T  42085809 tttcaccacgaacttatagcttatttcacgagcttataagctttttttcagacgctatttc 42085749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 53273175 - 53273233
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| || |||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  53273175 tttcaccatgaacttataacttatttcacgagcttataagctatttttcagaagctatt 53273233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 11050374 - 11050434
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| || ||||||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  11050374 tttcaccatgaacttatagcttatttcacgagcttataagctatttttcagaagctatttc 11050434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 39068895 - 39068943
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||||||||||||| ||| ||||| ||||||||||||||| ||||||    
T  39068895 cttataacttatttcaggagtttataacttatttttcagacgatatttc 39068943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 48056686 - 48056635
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||||||  ||||||||||| ||||||  |||||||||||||||||||    
T  48056686 acgaacttatagtttatttcacgaacttataagttatttttcagacgctatt 48056635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 9043685 - 9043639
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  9043685 cttataacttatttcacgagcttataagctatttttcagaagctatt 9043639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 18582913 - 18582959
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  18582913 cttataacttatttcacgagcttataagctatttttcagaagctatt 18582959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 22430692 - 22430750
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  22430692 tttcaccacgagcttatagcttatttcacgagcttataagctatttttcagatgctatt 22430750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 26826590 - 26826636
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  26826590 cttataacttatttcacgagcttataagctatttttcagaagctatt 26826636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 29413588 - 29413646
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| || ||||||||| |||||||||||||||||||   ||||||||||| ||||||    
T  29413588 tttcaccatgaacttatagcttatttcacgagcttataagctatttttcagaagctatt 29413646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 30366233 - 30366175
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  30366233 tttcatcatgagcttatatcttatttcacgagcttataaactatttttcagaagctatt 30366175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 55358413 - 55358367
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  55358413 cttataacttatttcacgagcttataagctatttttcagaagctatt 55358367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 55829073 - 55829119
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  55829073 cttataacttatttcacgagcttataaactatttttcagaagctatt 55829119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 50502310 - 50502355
Alignment:
Q  354 ttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||    
T  50502310 ttatagcttatttcacgagcttataagctatttttcagacgctatt 50502355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 4355667 - 4355619
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  4355667 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 4355619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 20148877 - 20148829
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  20148877 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 20148829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 21633897 - 21633845
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  21633897 cacgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 21633845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 33115044 - 33115092
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  33115044 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 33115092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 36196937 - 36196989
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  36196937 cacgagcttatagcttatttcacgagcttataaactatttttcagaagctatt 36196989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 42116965 - 42117013
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  42116965 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 42117013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 20450532 - 20450577
Alignment:
Q  354 ttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  20450532 ttataacttatttcacgagcttataagttatttttcagacgctatt 20450577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 25146378 - 25146434
Alignment:
Q  345 atcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||||| ||||||||||||||||| | |||||| |||||||||| |||||||||||    
T  25146378 atcacgagcttataacttatttcaccaacttataacttatttttctgacgctatttc 25146434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 42497055 - 42497113
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  42497055 tttcatcatgagcttataacttatttcacgagcttataagctatttttcagaagctatt 42497113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 51003308 - 51003368
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| ||||| |||||| |||||||||||||||||||   ||||||||||||| ||||||    
T  51003308 tttcaccacgagcttatagcttatttcacgagcttataagctatttttcagacgttatttc 51003368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 29718292 - 29718234
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  29718292 tttcatcatgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 29718234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 33897984 - 33897926
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||||| ||||||||   ||||||||||||||||||    
T  33897984 tttcaccacgagcttatagcttatttcacaagcttataagctatttttcagacgctatt 33897926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 39876675 - 39876733
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  39876675 tttcatcatgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 39876733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 44947292 - 44947234
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  44947292 tttcaccacgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 44947234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 29203111 - 29203058
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||| ||||||  ||||||||||||||||||   ||||||||||||||||||||    
T  29203111 acgagcttatagtttatttcacgagcttataagctatttttcagacgctatttc 29203058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 45693472 - 45693419
Alignment:
Q  346 tcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||| |||||||||||| ||||||   ||||||||||| ||||||    
T  45693472 tcacgaacttatagcttatttcacgaacttataagctatttttcagaagctatt 45693419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 8872946 - 8872994
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  8872946 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 8872994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 24350356 - 24350296
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| ||||| ||||||  |||||||||||| |||||  |||||||||||||||| ||||    
T  24350356 tttcaccacgagcttatagtttatttcacgagtttataaattatttttcagacgctgtttc 24350296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 37490009 - 37489957
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||| |||||||||||||||||||   |||||||||||| |||||    
T  37490009 cacgagcttatagcttatttcacgagcttataagctatttttcagacactatt 37489957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 46972106 - 46972154
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  46972106 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 46972154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 49853122 - 49853074
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  49853122 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 49853074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 46056497 - 46056437
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| ||||||||||||  ||||||||||||||||||   ||||||||||||||||||||    
T  46056497 tttcaccacgaacttatagtttatttcacgagcttataagatatttttcagacgctatttc 46056437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 32368398 - 32368352
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||    
T  32368398 cttataacttatttcacgagcttatatgctatttttcagaagctatt 32368352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 52703176 - 52703122
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| |||||| |||||||||||||||||||  |||||||||||| ||||||||    
T  52703176 cacgagcttatagcttatttcacgagcttataagttatttttcagaagctatttc 52703122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 25134919 - 25134971
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctattt 400  Q
    |||| |||||| |||||||||||||||||||   |||||||||||||||||||    
T  25134919 acgagcttatagcttatttcacgagcttataagctatttttcagacgctattt 25134971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 44719042 - 44718982
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||| ||||| |||||| ||||||| |||||||||||   ||||||||||||||||||||    
T  44719042 tttcaccacgagcttatagcttattttacgagcttataaactatttttcagacgctatttc 44718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 5697553 - 5697599
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||| |||||||||||||||||||   ||||||||||||||||||    
T  5697553 cttatagcttatttcacgagcttataagctatttttcagacgctatt 5697599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 7711025 - 7710967
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||||| || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  7711025 tttcatcatgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 7710967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 7781235 - 7781177
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| ||||| |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  7781235 tttcaccacgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 7781177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 15348900 - 15348946
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||| |||||||||||||||||||  |||||||||||| ||||||    
T  15348900 cttatagcttatttcacgagcttataaattatttttcagaagctatt 15348946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 29704143 - 29704097
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  29704143 cttataacttatttcacgagcttataagctatttttcagaagctatt 29704097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 30721694 - 30721636
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| || ||||||||| |||||||||||||||||||   ||||||||||| ||||||    
T  30721694 tttcaccatgaacttatagcttatttcacgagcttataagctatttttcagaagctatt 30721636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 912724 - 912777
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||| |||||||||||||||| ||||||||||| ||||||  |||| |||||||    
T  912724 acgagcttataacttatttcaggagcttatatcctattttctagacactatttc 912777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 27659429 - 27659376
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||||||||||||||||||| ||| |||||  ||||||| || ||||||||||    
T  27659429 acgaacttataacttatttcaggagtttatagtttattttccaaacgctatttc 27659376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 3270734 - 3270782
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  3270734 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 3270782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 13570858 - 13570806
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||||||||    
T  13570858 cacgagcttatagcttatttcacgaacttataagctatttttcagacgctatt 13570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 25602062 - 25602110
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  25602062 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 25602110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 26843827 - 26843875
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  26843827 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 26843875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 46088065 - 46088013
Alignment:
Q  347 cacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||| |||||||||||||||||||| |||||   ||||||||||||| ||||    
T  46088065 cacgagcttataacttatttcacgagtttataagctatttttcagacgttatt 46088013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 59264 - 59205
Alignment:
Q  341 tttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctattt 400  Q
    ||||||||||| ||||||||||||||||| ||||||||  ||||| ||||||| ||||||    
T  59264 tttcatcacgagcttataacttatttcactagcttatagtttattattcagacactattt 59205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 84320 - 84376
Alignment:
Q  345 atcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    ||||||| |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  84320 atcacgagcttatagcttatttcacgagcttataaactatttttcagaagctatttc 84376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 33609203 - 33609164
Alignment:
Q  348 acgaacttataacttatttcacgagcttatatcttatttt 387  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  33609203 acgagcttataacttatttcatgagcttatatcttatttt 33609164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 36407301 - 36407347
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  36407301 cttataacttatttcacgagcttataagctatttttcagaagctatt 36407347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 40258930 - 40258976
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  40258930 cttataacttatttcacgagcttataagctatttttcagaagctatt 40258976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 12345149 - 12345101
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  12345149 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 12345101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 17844603 - 17844663
Alignment:
Q  339 tatttcatcacgaacttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||| || || |||||| |||||||||||||||||||   ||||||||||| ||||||    
T  17844603 tatttcaccatgagcttatagcttatttcacgagcttataagctatttttcagaagctatt 17844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 21254779 - 21254731
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  21254779 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 21254731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 33203750 - 33203702
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatttc 401  Q
    |||||| |||||||||||||||||||   ||||||||||| ||||||||    
T  33203750 cttatagcttatttcacgagcttataagctatttttcagaagctatttc 33203702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 22667 - 22713
Alignment:
Q  353 cttataacttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    |||||| |||||||||||||||||||  |||||||||||| ||||||    
T  22667 cttatagcttatttcacgagcttataagttatttttcagaagctatt 22713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 5486 - 5526
Alignment:
Q  359 acttatttcacgagcttatatcttatttttcagacgctatt 399  Q
    ||||||||||||||||||||  |||||||||||| ||||||    
T  5486 acttatttcacgagcttataagttatttttcagaagctatt 5526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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