View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6051_low_7 (Length: 372)

Name: NF6051_low_7
Description: NF6051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6051_low_7
NF6051_low_7
[»] chr8 (8 HSPs)
chr8 (23-232)||(38822356-38822558)
chr8 (93-232)||(38799025-38799161)
chr8 (281-355)||(38799232-38799306)
chr8 (281-355)||(38822211-38822285)
chr8 (21-148)||(38798913-38799037)
chr8 (291-355)||(25865447-25865511)
chr8 (291-349)||(41943691-41943749)
chr8 (291-355)||(26591915-26591979)
[»] chr5 (2 HSPs)
chr5 (291-352)||(12531239-12531300)
chr5 (291-352)||(12547319-12547380)
[»] scaffold0197 (1 HSPs)
scaffold0197 (291-334)||(30759-30802)
[»] chr7 (2 HSPs)
chr7 (291-334)||(21317321-21317364)
chr7 (291-355)||(3930278-3930342)
[»] chr2 (1 HSPs)
chr2 (291-334)||(13576095-13576138)
[»] chr4 (2 HSPs)
chr4 (291-352)||(24860293-24860354)
chr4 (291-325)||(34748502-34748536)
[»] chr1 (1 HSPs)
chr1 (291-355)||(7594913-7594977)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 38822558 - 38822356
Alignment:
Q  23 ataggatcaatagaagtggaatcctccgcgtgctatcttctaagccaatcataaacgttagattcaactgacacggatcgatctaaaacgaatatgaacc 122  Q
    |||||||||||| |||||||||||   ||||||||| |||||||||||||| |||||||||||| |||  ||||||||||||||||||| ||| | ||||    
T  38822558 ataggatcaataaaagtggaatcc---gcgtgctatattctaagccaatcacaaacgttagatt-aacacacacggatcgatctaaaaccaatcttaacc 38822463  T
Q  123 gttagattgacacac--acggatcgatcccaaaacgaaaactccctccctccaaattttcatttcgtttgaaacgttgaattcaaaatctataaaaccca 220  Q
    |||||||  |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||||||||||||    
T  38822462 gttagatgaacactcgcacggatcgatcccaaaacgaaaactccctccctccaaattttcatttc-----aagcgttgaattcaaaatctataaaaccca 38822368  T
Q  221 ttttttcagatc 232  Q
    ||||||||||||    
T  38822367 ttttttcagatc 38822356  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 38799025 - 38799161
Alignment:
Q  93 acacggatcgatctaaaacgaatatgaaccgttagattgacacac--acggatcgatcccaaaacgaaaactccctccctccaaattttcatttcgtttg 190  Q
    ||||||||||||||||||| ||| | |||||||||||  |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||         
T  38799025 acacggatcgatctaaaaccaatcttaaccgttagatgaacactcgcacggatcgatcccaaaacgaaaactccctccctccaaattttcatttc----- 38799119  T
Q  191 aaacgttgaattcaaaatctataaaacccattttttcagatc 232  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  38799120 aagcgttgaattcaaaatctataaaacccattttttcagatc 38799161  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 38799232 - 38799306
Alignment:
Q  281 ttctctcacgatggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagctcgc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38799232 ttctctcacgatggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgc 38799306  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 38822285 - 38822211
Alignment:
Q  281 ttctctcacgatggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagctcgc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38822285 ttctctcacgatggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgc 38822211  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 38798913 - 38799037
Alignment:
Q  21 agataggatcaatagaagtggaatcctccgcgtgctatcttctaagccaatcataaacgttagattcaactgacacggatcgatctaaaacgaatatgaa 120  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||| ||  ||| ||||||||| | | | |||  | |    
T  38798913 agataggatcaatagaagtggaatcc---gcgtgctatcttctaagccaatcataaacgttatattctacacacatggatcgatcgacagccaattggga 38799009  T
Q  121 ccgttagattgacacacacggatcgatc 148  Q
     ||||||||| |||||||||||||||||    
T  38799010 tcgttagattaacacacacggatcgatc 38799037  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 25865447 - 25865511
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagctcgc 355  Q
    ||||| ||||| |||||||| |||||||||||||||||||| ||||| ||  ||||||| |||||    
T  25865447 atggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgc 25865511  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 41943691 - 41943749
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagca 349  Q
    ||||| ||||| |||||||| ||||||||||||||||| || ||||||||  |||||||    
T  41943691 atggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagca 41943749  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 26591915 - 26591979
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagctcgc 355  Q
    ||||||||||| |||||||| || ||||| ||||||||||| || || ||  |||||||||||||    
T  26591915 atggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgc 26591979  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 12531239 - 12531300
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagct 352  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || ||  ||||||||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagct 12531300  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 12547380 - 12547319
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagct 352  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || ||  ||||||||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagct 12547319  T

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Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 30759 - 30802
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaa 334  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  30759 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaa 30802  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 21317321 - 21317364
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaa 334  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  21317321 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaa 21317364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 3930342 - 3930278
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagctcgc 355  Q
    |||||||||||||| |||||||| || ||||||||||| ||||| || || ||||| || |||||    
T  3930342 atggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgc 3930278  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 13576095 - 13576138
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaa 334  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  13576095 atggcacgtaccaaacaaacagcccgcaaatccaccggcggaaa 13576138  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 24860293 - 24860354
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagct 352  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||| || ||  ||||||||||    
T  24860293 atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagct 24860354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 34748502 - 34748536
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccac 325  Q
    |||||||||||||||||||| ||||||||||||||    
T  34748502 atggcacgtaccaagcaaaccgctcgcaaatccac 34748536  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 7594977 - 7594913
Alignment:
Q  291 atggcacgtaccaagcaaacagctcgcaaatccaccggcggaaaggctccccggaagcagctcgc 355  Q
    ||||| |||||||||||||| |||||||| || ||||| || ||||||||  |||||||||||||    
T  7594977 atggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagctcgc 7594913  T

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