View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6052_high_12 (Length: 224)
Name: NF6052_high_12
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 32536709 - 32536902
Alignment:
| Q |
20 |
acctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaaccccaagccaagccctcaccaatctatgcattgtgatttgatagtac |
119 |
Q |
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| T |
32536709 |
acctgcgtaatgaataaattgcaaaaaataatccgaaatatgttgaggatcaaccccaagccaagccctcaccaatctatgcattgtgatttgatagtac |
32536808 |
T |
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| Q |
120 |
atgtgt-nnnnnnnnnnntttacaccatctatgcatgtaaattattttcgttcttcaacccctcatttaaaaataaataaaaacaagtattatc |
212 |
Q |
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| T |
32536809 |
atgtgtaaaaaaaaaaaaattacaccatctatgcatgtaaattattttcgttcttcaacccctcatttaaaaataaataaaaacaagtattatc |
32536902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 15959140 - 15959084
Alignment:
| Q |
20 |
acctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaacccc |
76 |
Q |
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| T |
15959140 |
acctgcgtaatgaacaaattgcgaaaaatggtctgaaatatgctgaggatgaacccc |
15959084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26771315 - 26771259
Alignment:
| Q |
20 |
acctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaacccc |
76 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
26771315 |
acctgcgtaatgaataaattgcaaaaaattgtccgaaatatgctgaggatcaacccc |
26771259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 17098203 - 17098163
Alignment:
| Q |
19 |
cacctgcgtaatgaataaattgcaaaaaatagtccgaaata |
59 |
Q |
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||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
17098203 |
cacctgcgtaatgaataaattgcaagaaatggtctgaaata |
17098163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 17765288 - 17765232
Alignment:
| Q |
20 |
acctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaacccc |
76 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||| |||||| |
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| T |
17765288 |
acctgcgtaatgaataagttgcaaaaaatggtctgaaatatgttgaggatcaacccc |
17765232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 15917467 - 15917507
Alignment:
| Q |
19 |
cacctgcgtaatgaataaattgcaaaaaatagtccgaaata |
59 |
Q |
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||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
15917467 |
cacctgcataatgaataaattgcaaaaaatggtctgaaata |
15917507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 34137289 - 34137242
Alignment:
| Q |
20 |
acctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgagg |
67 |
Q |
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|||||| |||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
34137289 |
acctgcataatgaataaattgcaaaaaatggtccaaaatatgctgagg |
34137242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 11587524 - 11587483
Alignment:
| Q |
20 |
acctgcgtaatgaataaattgcaaaaaatagtccgaaatatg |
61 |
Q |
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|||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
11587524 |
acctgcataatgaatgaattgcaaaaaatggtccgaaatatg |
11587483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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