View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6052_high_2 (Length: 404)
Name: NF6052_high_2
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_high_2 |
 | |
|
| [»] scaffold0122 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 65 - 377
Target Start/End: Original strand, 6343942 - 6344254
Alignment:
| Q |
65 |
ttctcttataatgtatggtccatcgtaaataatttgatgagtattcaaggtgtaaaacataatgaaggtgttcaacaactctttatgcgtatgaacttgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6343942 |
ttctcttataatgtatggtccatcgtaaataatttgatgagtattcaaggtgtaaaacataatgaaggtgttcaacaactctttatgcgtatgaacttgg |
6344041 |
T |
|
| Q |
165 |
tcttgaataagcgtttgacaagaacttgttttcttatttggttgactatcgttggattctttggttgggtcacaacaaagttatttttcaagaaggggtt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6344042 |
tcttgaataagcgtttgacaagaacttgttttcttatttggttgactatcgttggattctttggttgggtcacaacaaagttatttttcaagaaggggtt |
6344141 |
T |
|
| Q |
265 |
gcaggttgcaatatgataatctctcgaattaatatggtgttttgatgatgatttgttggtcgagttggtaagaaatataatttggtgtattatgattggt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6344142 |
gcaggttgcaatatgataatctctcgaattaatatggtgttttgatgatgatttgttggtcgagttggtaagaaatctaatttggtgtattatgattggt |
6344241 |
T |
|
| Q |
365 |
ttaattgtcttta |
377 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6344242 |
ttaattgtcttta |
6344254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 6343664 - 6343708
Alignment:
| Q |
17 |
ttcacgagttctgagtcagttcttattataaacacttgatctcac |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6343664 |
ttcacgagttctgagtcagttcttattataaacacttgatctcac |
6343708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 1051319 - 1051253
Alignment:
| Q |
238 |
aacaaagttatttttcaagaaggggttgcaggttgcaatatgataatctctcgaattaatatggtgt |
304 |
Q |
| |
|
||||| ||||||||| |||||||||||| | ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
1051319 |
aacaatgttattttttaagaaggggttgtggattgcaattcgataatctctcaaattaaaatggtgt |
1051253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 1051494 - 1051375
Alignment:
| Q |
65 |
ttctcttataatgtatggtccatcgtaaataatttgatgagt---attcaaggtgtaaaacataatgaaggtgttcaacaactctttatgcgtatgaact |
161 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| || | |||||||||||| |||||| || |||||||| ||||||||| | | || | |
|
|
| T |
1051494 |
ttctcttataatatatggtccacaataaataatttgatgggtttaaatcaaggtgtaaattgtaatgacggcgttcaacatctctttatgtg-agaaatt |
1051396 |
T |
|
| Q |
162 |
tggtcttgaataagcgtttga |
182 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
1051395 |
tggtcttgaataagcgcttga |
1051375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 41997413 - 41997351
Alignment:
| Q |
68 |
tcttataatgtatggtccatcgtaaataatttgatgagtattcaaggtgtaaaacataatgaa |
130 |
Q |
| |
|
|||||||||||||||||| | ||||||| | |||| |||||||||||||||| ||||||||| |
|
|
| T |
41997413 |
tcttataatgtatggtccttgataaataagtagatgggtattcaaggtgtaaaccataatgaa |
41997351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 1779 - 1851
Alignment:
| Q |
69 |
cttataatgtatggtccatcgtaaataatttgatgagtattcaaggtgtaaaacataatgaaggtgttcaaca |
141 |
Q |
| |
|
|||||||||||| ||||| | ||||||||| |||| | ||||||||| |||| |||||||||||||| |||| |
|
|
| T |
1779 |
cttataatgtattgtccaccctaaataattggatgggaattcaaggtctaaattataatgaaggtgtttaaca |
1851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University