View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6052_high_7 (Length: 267)
Name: NF6052_high_7
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 36934259 - 36934514
Alignment:
| Q |
12 |
aatactcagcagaagtgaagatcattagccagttgaggcatagaaatttagtgaaactcactggttggtgccacaagaagaatgaacttatcctgatata |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36934259 |
aatactccgcagaagtgaagatcattagccagttgaggcatagaaatttagtgaaactcactggttggtgccacaagaagaatgaacttatcctgatata |
36934358 |
T |
|
| Q |
112 |
cgaatacatgcctaatggcagcttagactttcatctttttcgcggaggaagcatcttggcttggaacttaaggtacaatatagctcttgggttggcctcg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36934359 |
cgaatacatgcctaatggcagcttagactttcatctttttcgcggaggaagcatcttgccttggaacttaaggtacaatatagctcttgggttggcctcg |
36934458 |
T |
|
| Q |
212 |
gcattgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36934459 |
gcattgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaa |
36934514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 47871393 - 47871637
Alignment:
| Q |
23 |
gaagtgaagatcattagccagttgaggcatagaaatttagtgaaactcactggttggtgccacaagaagaatgaacttatcctgatatacgaatacatgc |
122 |
Q |
| |
|
|||||||||||||||||||| | ||||| || |||||||| |||| | ||||||||| |||| ||| || || | |||| |||||||| | ||||| |
|
|
| T |
47871393 |
gaagtgaagatcattagccaacttaggcacaggaatttagtacaactaattggttggtgtcacatgaaaaaagacttcctccttatatacgagttcatgc |
47871492 |
T |
|
| Q |
123 |
ctaatggcagcttagactttcatctttttcgcggaggaagcatcttggcttggaacttaaggtacaatatagctcttgggttggcctcggcattgcttta |
222 |
Q |
| |
|
||||| |||||||| | ||| || | ||||||| |||||| ||| | ||| | | |||||||| || ||| | | ||||| ||||||||| | || |
|
|
| T |
47871493 |
aaaatggtagcttagattctcacctatatcgcggaaaaagcatattgacatggcaagtgaggtacaacattgctatggatttggcttcggcattgttgta |
47871592 |
T |
|
| Q |
223 |
tttgcaggaagaatgggaaaaatgtgtgattcatagggacataaa |
267 |
Q |
| |
|
| | || |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
47871593 |
tcttcatgaagaatgggaacaatgtgtgattcatagagacataaa |
47871637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 28279212 - 28279257
Alignment:
| Q |
216 |
tgctttatttgcaggaagaatgggaaaaatgtgtgattcataggga |
261 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | |||||||| |
|
|
| T |
28279212 |
tgctttatttacatgaagaatgggaaaaatgtgtggtacataggga |
28279257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University