View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6052_low_1 (Length: 914)
Name: NF6052_low_1
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 830; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 18 - 902
Target Start/End: Complemental strand, 53618896 - 53618009
Alignment:
| Q |
18 |
acaccatattggtttgccgtattctaatttaaaaatggaatattttttgacagaaagtaagaaaataaattatgatattcgaaattattctaagatatat |
117 |
Q |
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| T |
53618896 |
acaccatattggtttgccgtatcctaatttaaaaatggaatattttttgacagaaagtaagaaaataaattatgatattcaaaattattctaagatatat |
53618797 |
T |
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| Q |
118 |
attttaataatattaatgcaaagaaaaggattatcctgtacatggaaaacatgttagatattcacatgaaaaacttgttatgcatgtgagcatctcagtt |
217 |
Q |
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| T |
53618796 |
attttaataatattaatgcaaagaaaaggattatcctgtacatgggaaacatgttagattttcacatgaaaaacttgttatgcatgtgagcatctcagat |
53618697 |
T |
|
| Q |
218 |
tagagcatcaaattcgtcctgtatcgccaataatatattaaaactagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaa |
317 |
Q |
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| T |
53618696 |
tagagcatcaaattcgtcctgtatcaccaataatatattaaaactagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaa |
53618597 |
T |
|
| Q |
318 |
agaaacataaaacagtctaggaaagctactaaaccatagcataaagcatgcctgctgcttgaaaaggctaagcttactgctggcatatcgaggtgacaac |
417 |
Q |
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| T |
53618596 |
agaaacataaaaaagtctaggaaagctactaaaccatagcataaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaac |
53618497 |
T |
|
| Q |
418 |
acacatgaaactgaagaatgcttgaaaaactttcgagtttcttcatcgtgagtttgcattattccattctgcaacaaaattattaactagtaaggttcgg |
517 |
Q |
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| T |
53618496 |
acacatgaaactgaagaatgcttgaaaaactttcgagtttcttcatcatgagtttgcattattccattctgcaacaaaattattaactagtaaggttcgg |
53618397 |
T |
|
| Q |
518 |
aaaaggctcaacaaacaccaaatgaaacttggcagcaagccaaacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatg |
617 |
Q |
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| T |
53618396 |
aaaaggctcaacaaacaccaaatgaaacttggcagcaagccaaacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatg |
53618297 |
T |
|
| Q |
618 |
tataaaatccattaacagtaaaagttaatgtaaaatgaagatgacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaaca |
717 |
Q |
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| T |
53618296 |
tataaaatccatcaacagtaaaagttaatgtaaaatgaagatgacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaaca |
53618197 |
T |
|
| Q |
718 |
atgtttgatgttattaagttacttttactgggccccaagttttcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatacttgc |
817 |
Q |
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| T |
53618196 |
atgtttgatgttattaagttacttttactgggccccaagttttcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatatttgc |
53618097 |
T |
|
| Q |
818 |
gttctaatgtaccttaaagggtcccacagtttaccactatttgtcttatgaacatgtcctagtat---agaaactctacttacatatt |
902 |
Q |
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| T |
53618096 |
gttctaatgtaccttaaagggtcccacagtttaccactatttgtcttatgaacatgtcctagtatagaagaaactctacttacatatt |
53618009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 713 - 793
Target Start/End: Complemental strand, 14344796 - 14344716
Alignment:
| Q |
713 |
gaacaatgtttgatgttattaagttacttttactgggccccaagttttcacatgtgatttaagaacattcacctatgttta |
793 |
Q |
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|||||||| || ||||| || ||||||||||| |||||||||||||| || ||| |||||||||||||||||||| |||| |
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| T |
14344796 |
gaacaatgctttatgttcttgagttacttttagtgggccccaagtttccatgtgttatttaagaacattcacctattttta |
14344716 |
T |
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