View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6052_low_10 (Length: 238)
Name: NF6052_low_10
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 52972519 - 52972298
Alignment:
| Q |
1 |
ctactttgcgtcttgtggatatcttcaaacatggaattgaaacacttaaacctctctctcaaaacctgcttagacaccttgttcccttgttgatgaaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52972519 |
ctactttgcgtcttgtggatatcttcaaacatggaattgaaacacttaaacctctctctcaaaacctgcttagagaccttgttcccttgttgatgaaggc |
52972420 |
T |
|
| Q |
101 |
catctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttatggtggaacttcaaacttgtttgcctcctcctgcaccagttatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52972419 |
catctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttatggtggaacttcaaacttgtttgcctcctcctacaccagttatc |
52972320 |
T |
|
| Q |
201 |
acccatggactcatgaagatca |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
52972319 |
acccatggactcatgaagatca |
52972298 |
T |
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