View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6052_low_3 (Length: 403)
Name: NF6052_low_3
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 36934514 - 36934898
Alignment:
| Q |
1 |
aatcaagcaacataatgttggactccgacttcaatactaagctaggggattttggtctagctaggttgatggatcatgagaaagggtcagaaaccacagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934514 |
aatcaagcaacataatgttggactccgacttcaatactaagctaggggattttggtctagctaggttgatggatcatgagaaagggtcagaaaccacagt |
36934613 |
T |
|
| Q |
101 |
tgtagctggaacccgaggttacctagcacctgaatacatggacacaggcaaggctagaaaagaatcagatatattcagttttggggttgttttgttggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36934614 |
tgtagctggaacccgaggttacctagcacctgaatacattgacacaagcaaggctagaaaagaatcagatatatttagttttggggttgttttgttggag |
36934713 |
T |
|
| Q |
201 |
atagcctgtggnnnnnnngccatacaccaccaagaattagagggtgaagtatcattagttgaatgggtttgggagctgtatggattgagaaatctaattg |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934714 |
atagcctgtggaaaaaaagccatacaccaccaagaattagagggtgaagtatcattagttgaatgggtttgggagctgtatggattgagaaatctaattg |
36934813 |
T |
|
| Q |
301 |
tagcagcagatccaaaactatgtgggatatttgatgtgaagcaattggaatgtttgctagttgttggactttggtgtgctaatcc |
385 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934814 |
tagcagcagatccaaagctatgtgggatatttgatgtgaagcaattggaatgtttgctagttgttggactttggtgtgctaatcc |
36934898 |
T |
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