View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6052_low_4 (Length: 362)

Name: NF6052_low_4
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6052_low_4
NF6052_low_4
[»] chr7 (16 HSPs)
chr7 (19-351)||(29054622-29054952)
chr7 (19-123)||(46373458-46373555)
chr7 (126-214)||(45613981-45614069)
chr7 (165-222)||(7637641-7637699)
chr7 (87-124)||(46369670-46369707)
chr7 (87-123)||(34346801-34346837)
chr7 (126-189)||(21454650-21454713)
chr7 (127-222)||(45003028-45003123)
chr7 (126-180)||(19277171-19277225)
chr7 (159-213)||(48539094-48539148)
chr7 (142-222)||(5825169-5825249)
chr7 (142-222)||(21326969-21327049)
chr7 (87-123)||(22883053-22883089)
chr7 (164-222)||(28517418-28517476)
chr7 (127-180)||(38766205-38766258)
chr7 (137-213)||(43333970-43334046)
[»] chr5 (12 HSPs)
chr5 (19-125)||(20407630-20407736)
chr5 (126-183)||(11005758-11005815)
chr5 (127-222)||(35310329-35310424)
chr5 (87-124)||(20405091-20405128)
chr5 (87-123)||(125614-125650)
chr5 (126-214)||(15292164-15292252)
chr5 (87-120)||(34992316-34992349)
chr5 (122-222)||(16017049-16017149)
chr5 (170-222)||(20700526-20700578)
chr5 (126-213)||(2566235-2566322)
chr5 (122-213)||(23023471-23023562)
chr5 (158-223)||(430514-430579)
[»] chr4 (19 HSPs)
chr4 (19-123)||(36040746-36040850)
chr4 (127-222)||(39001278-39001373)
chr4 (130-222)||(50442610-50442702)
chr4 (127-222)||(3329877-3329972)
chr4 (126-211)||(30940874-30940959)
chr4 (127-222)||(4419145-4419239)
chr4 (87-124)||(37082651-37082688)
chr4 (137-222)||(53619477-53619562)
chr4 (87-123)||(54959897-54959933)
chr4 (126-185)||(40392722-40392781)
chr4 (130-189)||(54927364-54927423)
chr4 (127-189)||(50351154-50351216)
chr4 (87-123)||(14198528-14198564)
chr4 (121-189)||(26521364-26521432)
chr4 (127-222)||(50001057-50001152)
chr4 (127-213)||(31846984-31847070)
chr4 (126-206)||(16009247-16009325)
chr4 (142-222)||(23255609-23255689)
chr4 (126-202)||(50464447-50464523)
[»] chr3 (19 HSPs)
chr3 (19-123)||(26066893-26066997)
chr3 (19-116)||(42375124-42375221)
chr3 (19-116)||(42403838-42403935)
chr3 (24-123)||(12007168-12007267)
chr3 (131-223)||(50446150-50446242)
chr3 (127-222)||(26772639-26772734)
chr3 (126-213)||(32546675-32546762)
chr3 (126-213)||(26856902-26856989)
chr3 (79-123)||(52275643-52275687)
chr3 (87-124)||(54760426-54760463)
chr3 (126-213)||(53785589-53785676)
chr3 (125-213)||(4669803-4669891)
chr3 (171-207)||(30199868-30199904)
chr3 (142-222)||(38671011-38671091)
chr3 (146-213)||(39583369-39583436)
chr3 (126-208)||(26276495-26276577)
chr3 (126-208)||(49017847-49017929)
chr3 (126-183)||(44713-44770)
chr3 (87-124)||(21631379-21631416)
[»] chr2 (17 HSPs)
chr2 (19-123)||(13098273-13098377)
chr2 (19-123)||(29609088-29609192)
chr2 (130-211)||(18745096-18745177)
chr2 (126-189)||(3208408-3208471)
chr2 (130-213)||(28224884-28224967)
chr2 (126-213)||(4413206-4413293)
chr2 (126-213)||(9685555-9685642)
chr2 (126-189)||(42122697-42122760)
chr2 (158-213)||(13413263-13413318)
chr2 (126-213)||(17344518-17344605)
chr2 (127-222)||(27494192-27494287)
chr2 (49-115)||(1074224-1074290)
chr2 (126-184)||(30602369-30602427)
chr2 (137-186)||(18892373-18892422)
chr2 (126-183)||(41702152-41702209)
chr2 (149-213)||(15535570-15535634)
chr2 (129-213)||(41868048-41868131)
[»] chr1 (25 HSPs)
chr1 (19-123)||(50985594-50985698)
chr1 (19-122)||(7733620-7733723)
chr1 (19-124)||(41767806-41767911)
chr1 (19-123)||(11166890-11166994)
chr1 (19-123)||(37381550-37381654)
chr1 (19-122)||(46387946-46388049)
chr1 (19-123)||(4297274-4297378)
chr1 (19-121)||(7698840-7698940)
chr1 (137-222)||(21934268-21934354)
chr1 (126-213)||(22346775-22346862)
chr1 (126-183)||(868571-868628)
chr1 (127-208)||(5453976-5454057)
chr1 (130-215)||(24177649-24177734)
chr1 (129-213)||(21472886-21472970)
chr1 (128-212)||(30688439-30688523)
chr1 (142-201)||(2898598-2898657)
chr1 (87-124)||(7731070-7731107)
chr1 (87-120)||(41771182-41771215)
chr1 (87-124)||(46323221-46323258)
chr1 (131-222)||(34644451-34644542)
chr1 (126-173)||(44420592-44420639)
chr1 (159-209)||(45835330-45835380)
chr1 (142-211)||(31737465-31737533)
chr1 (130-198)||(1114023-1114091)
chr1 (142-222)||(2764375-2764455)
[»] chr8 (15 HSPs)
chr8 (19-125)||(44843255-44843361)
chr8 (19-115)||(37741967-37742063)
chr8 (41-124)||(28130785-28130868)
chr8 (122-213)||(22589476-22589567)
chr8 (126-213)||(38815174-38815261)
chr8 (129-222)||(3187853-3187946)
chr8 (19-63)||(28130740-28130784)
chr8 (126-189)||(18804493-18804556)
chr8 (137-210)||(4699762-4699835)
chr8 (136-201)||(39434557-39434622)
chr8 (142-189)||(26033676-26033723)
chr8 (167-204)||(139267-139304)
chr8 (137-213)||(8882235-8882311)
chr8 (153-189)||(16945702-16945738)
chr8 (138-190)||(34298144-34298196)
[»] chr6 (12 HSPs)
chr6 (22-123)||(18273147-18273248)
chr6 (127-222)||(17249436-17249531)
chr6 (126-213)||(3137387-3137474)
chr6 (87-124)||(30698603-30698640)
chr6 (127-206)||(7749362-7749441)
chr6 (166-223)||(32291365-32291422)
chr6 (127-222)||(33220842-33220937)
chr6 (164-210)||(4206739-4206785)
chr6 (129-222)||(959464-959557)
chr6 (126-215)||(28625811-28625900)
chr6 (87-115)||(5325873-5325901)
chr6 (149-213)||(34304399-34304463)
[»] scaffold0009 (1 HSPs)
scaffold0009 (126-222)||(102986-103082)
[»] scaffold2013 (1 HSPs)
scaffold2013 (87-124)||(721-758)
[»] scaffold0406 (1 HSPs)
scaffold0406 (126-189)||(6768-6831)
[»] scaffold0148 (1 HSPs)
scaffold0148 (126-213)||(33130-33217)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 29054622 - 29054952
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054622 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 29054721  T
Q  119 gagataaaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054722 gagataaaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaa 29054821  T
Q  219 cattagtattcatttgagttattgtctcttgtgtcnnnnnnngtgtgttcctaactgtggctagtcaatagtgcagccnnnnnnnnnnnctgccgagtga 318  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||           |||||||||||    
T  29054822 cattagtattcatttgagttattgtctcttgtgtccttttttgtgtgttcctaactgtggctagtcaatagtgcagcc--tttttttttctgccgagtga 29054919  T
Q  319 attcagagcgaagggcatttttatcaatttcat 351  Q
    |||||||||||||||||||||||||||||||||    
T  29054920 attcagagcgaagggcatttttatcaatttcat 29054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 46373458 - 46373555
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||    
T  46373458 aagttaaagacagattttaccctt----tggtgatttgtcaattaaccaggttggggcattaataggatttccacaacatcttc---tcttatattaaga 46373550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 45614069 - 45613981
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagat 214  Q
    ||||||||||  ||| ||||||||||||||  |||||  |||||||||||||||||||| |||| || |||||||| ||||||||||||    
T  45614069 aaggcaagcggacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagat 45613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 7637699 - 7637641
Alignment:
Q  165 ggatggcaaaaccaatcctctt-aaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7637699 ggatggcaaaatcaatcctcttgaaaaactacattcatagacctagaagacacaacatt 7637641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 46369670 - 46369707
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46369670 tttccacaacatcttctcttcttatattaagagagata 46369707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 34346801 - 34346837
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagat 123  Q
    |||||||||||||||||||||||||||||||||||||    
T  34346801 tttccacaacatcttctcttcttatattaagagagat 34346837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 21454650 - 21454713
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    ||||||||||||||| ||||||||||||| ||||||| || || ||||||| ||||||| ||||    
T  21454650 aaggcaagcgagcaacaagctgcgccgctcatcctttttgtattgcaaaactaatcctcgtaaa 21454713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 45003123 - 45003028
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||||||||  ||||||||||||||||||  ||||| |||||||||||| ||||| || |||| || |||||||| | |||| |||| | ||||||    
T  45003123 aggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtcctatgagacataacatt 45003028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 19277171 - 19277225
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaat 180  Q
    |||||| ||| |||||||||||||||||||  ||||| |||||||||||||||||    
T  19277171 aaggcaggcgggcaataagctgcgccgctagacctttttggatggcaaaaccaat 19277225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 48539094 - 48539148
Alignment:
Q  159 ctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||| ||||||||||||||||||||| |||| || |||||||| |||||||||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggaga 48539148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 5825169 - 5825249
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||||||||||  |  ||||| | ||||||||||||||||||| |||| || |||| ||||||||||||||| | ||||||    
T  5825169 aagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaacacaacatccatagacctaggagacataacatt 5825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 21327049 - 21326969
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||||| ||  ||||| |||||||||||| |||||||| | || || |||||||| ||||||||||| | ||||||    
T  21327049 aagctgcgccgttagacctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctaggagacataacatt 21326969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 22883053 - 22883089
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagat 123  Q
    |||||||||||||||| ||||||||||||||||||||    
T  22883053 tttccacaacatcttcccttcttatattaagagagat 22883089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 28517476 - 28517418
Alignment:
Q  164 tggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||||||||||||||| |||| || |||||||| ||| ||||||| | ||||||    
T  28517476 tggatggcaaaaccaatcctcgtaaacacaacattcatggacttaggagacataacatt 28517418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 38766205 - 38766258
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaat 180  Q
    ||||||||| |||| ||||||||| ||||  ||||| |||||||||||||||||    
T  38766205 aggcaagcgggcaacaagctgcgcagctagacctttttggatggcaaaaccaat 38766258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 43334046 - 43333970
Alignment:
Q  137 gcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||| |||||||||||| ||  |||| || ||||||||||||||| || ||||  | ||||||||||| ||||||||    
T  43334046 gcaacaagctgcgccgccaagtctttttgaatggcaaaaccaatcatcataaactcaacattcatagatctaggaga 43333970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 20407630 - 20407736
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407630 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 20407729  T
Q  119 gagataa 125  Q
    |||||||    
T  20407730 gagataa 20407736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 11005758 - 11005815
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcct 183  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  11005758 aaggcaagcgggcaacaagctgcgccgctaagcctttttggatggcaaaaccaatcct 11005815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 35310329 - 35310424
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| |||||||| || ||| ||| | ||||||||||||||||| ||| |||| || |||||||| ||||||||||| | ||||||    
T  35310329 aggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacatt 35310424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 20405091 - 20405128
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20405091 tttccacaacatcttctcttcttatattaagagagata 20405128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 125614 - 125650
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagat 123  Q
    |||||||||||||||||||||||||||||||||||||    
T  125614 tttccacaacatcttctcttcttatattaagagagat 125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 15292252 - 15292164
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagat 214  Q
    |||||||| | |||| || ||||||||| || | ||| |||||||||||| |||||||| |||| || |||||||| ||||||||||||    
T  15292252 aaggcaagtgggcaacaaactgcgccgccaagcttttttggatggcaaaatcaatcctcataaacacaacattcatggacctaggagat 15292164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 34992349 - 34992316
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagaga 120  Q
    ||||||||||||||||||||||||||||||||||    
T  34992349 tttccacaacatcttctcttcttatattaagaga 34992316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 16017049 - 16017149
Alignment:
Q  122 ataaaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacat 221  Q
    |||||||||| || | ||| |||||||||||  || | ||| | |||||||||| ||||| |||||||||| |||  |||| |||||||||| |||||||    
T  16017049 ataaaaggcaggccatcaaaaagctgcgccgtaaaccgtttttagatggcaaaatcaatcatcttaaaaaccacacccataaacctaggagacacaacat 16017148  T
Q  222 t 222  Q
    |    
T  16017149 t 16017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 20700526 - 20700578
Alignment:
Q  170 gcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||||| |||||||||||||||||||||||||| ||||| | || ||||||||    
T  20700526 gcaaaatcaatcctcttaaaaactacattcataaacctatgggacacaacatt 20700578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 2566322 - 2566235
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||| | |||| ||| ||||||||||  ||||| |||||||||||| |||||||| |||| || ||||| || || ||||||||    
T  2566322 aaggcaagtgggcaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctaggaga 2566235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 23023471 - 23023562
Alignment:
Q  122 ataaaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||||||| ||  ||||||| |||||| |||  ||||| |||||| ||||| ||||| || |||| || |||||||| |||||||||||    
T  23023471 ataaaaggcaaacggacaataagatgcgcccctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctaggaga 23023562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 430514 - 430579
Alignment:
Q  158 cctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatta 223  Q
    ||||| ||||||||| || |||||||| |||| || |||||||| ||||||||||| | |||||||    
T  430514 cctttttggatggcataatcaatcctcgtaaacacaacattcatggacctaggagacataacatta 430579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 36040746 - 36040850
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040746 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 36040845  T
Q  119 gagat 123  Q
    |||||    
T  36040846 gagat 36040850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 39001278 - 39001373
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| || |||||||||||  ||||| |||||| |||||||||||||| |||| || |||||||| ||||||||||| ||||||||    
T  39001278 aggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctaggagacacaacatt 39001373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 50442702 - 50442610
Alignment:
Q  130 caagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||||| |||| |||||||||| |||| ||||| |||||||||||||||||||||||||| || |||| |||  |||||||||| | ||||||    
T  50442702 caagcgggcaacaagctgcgccactaaccctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctaggagacataacatt 50442610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 3329877 - 3329972
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| ||||||||||||||  ||||| |||||||||||||||||| || |||| ||  ||||||| ||||||||||| | ||||||    
T  3329877 aggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctaggagacataacatt 3329972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 30940959 - 30940874
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctagga 211  Q
    |||||||||| |||| |||||||| |||||  ||||| |||||||||||| |||||||| | || || ||||||||||||||||||    
T  30940959 aaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatagacctagga 30940874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 4419145 - 4419239
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgcta-atcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| |||||||||||||| ||  ||| |||||||||||||||||| || |||| || |||||||| ||||||||||| | ||||||    
T  4419145 aggcaagcgggcaacaagctgcgccgctagat--tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctaggagacataacatt 4419239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 37082688 - 37082651
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37082688 tttccacaacatcttctcttcttatattaagagagata 37082651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 53619477 - 53619562
Alignment:
Q  137 gcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||| ||||||||||||||  ||||| ||||||||||||||||| ||| |||| || |||||||| |||||| |||| | ||||||    
T  53619477 gcaacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaagagacataacatt 53619562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 54959933 - 54959897
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagat 123  Q
    |||||||||||||||||||||||||||||||||||||    
T  54959933 tttccacaacatcttctcttcttatattaagagagat 54959897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 40392781 - 40392722
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctct 185  Q
    ||||||||||  ||| ||||||||||||||  ||||| ||||||||||||||||||||||    
T  40392781 aaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaaccaatcctct 40392722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 54927364 - 54927423
Alignment:
Q  130 caagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||||| |||| ||||||||||||||| ||||| | |||||||||| |||||||||||||    
T  54927364 caagcgtgcaacaagctgcgccgctaaccctttctagatggcaaaatcaatcctcttaaa 54927423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 50351216 - 50351154
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||||||||| ||| |||| | ||| |||||||||| ||||||||||||||||||| ||||||    
T  50351216 aggcaagcgaccaacaagcagtgcccctaatcctttttggatggcaaaaccaatccacttaaa 50351154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 14198564 - 14198528
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagat 123  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14198564 tttccacaacatcttcccttcttatattaagagagat 14198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 26521364 - 26521432
Alignment:
Q  121 gataaaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||| ||||||||||  ||| |||||| |||||||| ||||| |||||| |||||||||||||| ||||    
T  26521364 gatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaa 26521432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 50001152 - 50001057
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| ||||||||||||||   |||| |||||||||||| ||||| || |||| || ||||| || || |||||||| | ||||||    
T  50001152 aggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaacatttatggatctaggagacataacatt 50001057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 31846984 - 31847070
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||||| |||| || |||||||||||  ||||| ||||||||| ||| |||||||   || || |||||||| |||||||||||    
T  31846984 aggcaagcgggcaacaacctgcgccgctagacctttttggatggcataacgaatcctcgctaacacaacattcatggacctaggaga 31847070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 16009247 - 16009325
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacc 206  Q
    |||||||||  |||| ||||||||||||||| ||||| |  || |||||||||||| ||||||| || |||||||||||||    
T  16009247 aaggcaagcaggcaacaagctgcgccgctaa-cctttttttatcgcaaaaccaatcatcttaaacac-acattcatagacc 16009325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 23255609 - 23255689
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||||||||  | ||| |||||||||||| |||||||| |||| || | |||||| ||| ||||||| | ||||||    
T  23255609 aagctgcgccgctagacttttctggatggcaaaatcaatcctcgtaaacacaatattcatggacttaggagacataacatt 23255689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 50464523 - 50464447
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcata 202  Q
    ||||||||||  ||| ||||||||||||||   |||| ||||||||||||  ||||||| |||| || |||||||||    
T  50464523 aaggcaagcggacaacaagctgcgccgctaggtctttttggatggcaaaataaatcctcgtaaacacaacattcata 50464447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 26066893 - 26066997
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26066893 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 26066992  T
Q  119 gagat 123  Q
    |||||    
T  26066993 gagat 26066997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 42375124 - 42375221
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375124 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 42375221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 42403838 - 42403935
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42403838 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 42403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 12007267 - 12007168
Alignment:
Q  24 aaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 123  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12007267 aaagacagattttaccattactttggtgatttgtcaattaaccaggttggggcatgaataggatttccacaacatcttctcttcttatattaagagagat 12007168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 50446150 - 50446242
Alignment:
Q  131 aagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatta 223  Q
    ||||| |||| || |||||| ||||||||||| |||||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  50446150 aagcgggcaacaacctgcgctgctaatcctttttggatgacaaaaccaatccttctaaaaactacatccatagacctaggagatacaacatta 50446242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 26772639 - 26772734
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| ||||||||||||||  ||||| |||||||||||| |||||||| |||| || |||||||| ||||||||||| | ||||||    
T  26772639 aggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctaggagacataacatt 26772734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 32546675 - 32546762
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||||| | || || |||||||| |||||||||||    
T  32546675 aaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctaggaga 32546762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 26856989 - 26856902
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||||||||||| ||||||||||||||  ||||| ||||||| |||||||||||||  ||  || ||||||||| ||||||||||    
T  26856989 aaggcaagcgagcaacaagctgcgccgctaggcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctaggaga 26856902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 52275687 - 52275643
Alignment:
Q  79 taataggatttccacaacatcttctcttcttatattaagagagat 123  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  52275687 taataggttttccacaacatcttctcttcttatattaagagagat 52275643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 54760463 - 54760426
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54760463 tttccacaacatcttctcttcttatattaagagagata 54760426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 53785589 - 53785676
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||| |||| ||||| |||||||   ||||  ||||||||||||||||||||| |||| |  |||||||| |||||||||||    
T  53785589 aaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatcctcgtaaacataacattcatggacctaggaga 53785676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 4669891 - 4669803
Alignment:
Q  125 aaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||||||| |||| |||||||||||| || ||||| |||||  ||||| ||||| || |||| || |||||||| |||| ||||||    
T  4669891 aaaggcaagcgggcaacaagctgcgccgccaaacctttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggaga 4669803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 30199868 - 30199904
Alignment:
Q  171 caaaaccaatcctcttaaaaactacattcatagacct 207  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30199868 caaaaccaatcctcttaaaaactacatttatagacct 30199904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 38671091 - 38671011
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||||||||  | ||| | ||||||||||||||||||| || | || |||||||| ||||||||||| | ||||||    
T  38671091 aagctgcgccgctagacttttttagatggcaaaaccaatcctcgtacacacaacattcatggacctaggagacataacatt 38671011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 39583436 - 39583369
Alignment:
Q  146 tgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||||||  ||||| |||||||||||| |||||||| |||| || ||||||||  ||||||||||    
T  39583436 tgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctaggaga 39583369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 26276495 - 26276577
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagaccta 208  Q
    |||||||||| |||| ||||| | ||||||   |||| |||||||||||| |||||||| |||| || |||||||| ||||||    
T  26276495 aaggcaagcgggcaacaagctacaccgctagatctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 49017847 - 49017929
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagaccta 208  Q
    ||||||||||  ||| ||||||| ||||  || |||| |||||||||||| |||||||| |||| || |||||||| ||||||    
T  49017847 aaggcaagcggacaacaagctgcaccgccgatactttttggatggcaaaatcaatcctcataaacacaacattcattgaccta 49017929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 44713 - 44770
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcct 183  Q
    |||||||||| |||| || |||||||||||  ||||| ||||||||||||| ||||||    
T  44713 aaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaacaaatcct 44770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 21631416 - 21631379
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  21631416 tttctacaacatcttctcttcttacattaagagagata 21631379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 13098377 - 13098273
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13098377 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 13098278  T
Q  119 gagat 123  Q
    |||||    
T  13098277 gagat 13098273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 29609088 - 29609192
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29609088 aagttaaagacaaattttacccttactttggtgatttgtcaattaactaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 29609187  T
Q  119 gagat 123  Q
    |||||    
T  29609188 gagat 29609192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 18745177 - 18745096
Alignment:
Q  130 caagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctagga 211  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||  |||| || ||||||||||||||||||    
T  18745177 caagcgagcaataagctgcgccgctagacctttttggatggcaaaaccaatccttataaacacaacattcatagacctagga 18745096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 3208471 - 3208408
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  3208471 aaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaatcctcgtaaa 3208408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 28224884 - 28224967
Alignment:
Q  130 caagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||| |||||||||||||||||||  ||||| ||||||||||||| |||| || |||| || |||||||| |||||||||||    
T  28224884 caagcgggcaataagctgcgccgctagacctttttggatggcaaaacaaatcttcataaacacaacattcattgacctaggaga 28224967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 4413293 - 4413206
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||| | |||| ||||||||||||||  ||||| |||||||||||| |||||||| | || || |||||||| |||||||||||    
T  4413293 aaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctaggaga 4413206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 9685642 - 9685555
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||| |||| ||||||||||||||  ||||| |||||||||||| ||||| |  | || || |||||||| |||||||||||    
T  9685642 aaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctaggaga 9685555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 42122697 - 42122760
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    ||||||||||| ||||||||||||||||||  | ||| ||||||||||||||| ||||| ||||    
T  42122697 aaggcaagcgaacaataagctgcgccgctagacttttttggatggcaaaaccagtcctcgtaaa 42122760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 13413263 - 13413318
Alignment:
Q  158 cctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||| ||||||||||||||||| ||| |||| || |||||||| |||||||||||    
T  13413263 cctttttggatggcaaaaccaattctcataaacacaacattcatggacctaggaga 13413318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 17344518 - 17344605
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||  |||| ||||||||||| ||  ||||| ||||| | |||| |||||||| |||| || |||||||| |||||||||||    
T  17344518 aaggcaagccggcaacaagctgcgccgatagacctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacctaggaga 17344605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 27494192 - 27494287
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||  |||| ||||||||||| ||  ||||| |||||||||||||||||  || |||| || | |||||||||| ||||||| | ||||||    
T  27494192 aggcaagcaggcaacaagctgcgccgttagacctttttggatggcaaaaccaatattcgtaaacacaatattcatagacttaggagacataacatt 27494287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 1074290 - 1074224
Alignment:
Q  49 gtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatatta 115  Q
    ||||||||||||  ||||||  | ||| | ||||||  |||||||||||||||||||||||||||||    
T  1074290 gtgatttgtcaaccaaccagcatagggtaataatagattttccacaacatcttctcttcttatatta 1074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 30602369 - 30602427
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctc 184  Q
    |||||| ||| |||| ||||||||| ||||  ||||| |||||||||||||||||||||    
T  30602369 aaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctc 30602427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 18892422 - 18892373
Alignment:
Q  137 gcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctctt 186  Q
    |||| ||||||| ||||||||||||| |||||| ||||||| ||||||||    
T  18892422 gcaacaagctgcaccgctaatcctttctggatgacaaaaccgatcctctt 18892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 41702152 - 41702209
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcct 183  Q
    |||||||| | |||| |||||||||| |||  ||||| ||||||||||||||||||||    
T  41702152 aaggcaagtgggcaacaagctgcgccactaggcctttttggatggcaaaaccaatcct 41702209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 15535570 - 15535634
Alignment:
Q  149 gccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||| ||||||||| || ||| ||||| |||| || | |||||||||||||| ||||||||||||    
T  15535570 gccgttaatcctttctgaatgacaaaatcaatgctatgaaaaactacattcaaagacctaggaga 15535634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 41868131 - 41868048
Alignment:
Q  129 gcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||| |||| ||| ||||||||||   |||| ||| ||||||||||||||||| |||| || |||||||| ||||| |||||    
T  41868131 gcaagcgggcaacaagttgcgccgctagatctttttgg-tggcaaaaccaatcctcgtaaacacaacattcatggacctgggaga 41868048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 50985698 - 50985594
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50985698 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 50985599  T
Q  119 gagat 123  Q
    |||||    
T  50985598 gagat 50985594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 7733620 - 7733723
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7733620 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 7733719  T
Q  119 gaga 122  Q
    ||||    
T  7733720 gaga 7733723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 41767911 - 41767806
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41767911 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacattttctcttcttatattaaga 41767812  T
Q  119 gagata 124  Q
    ||||||    
T  41767811 gagata 41767806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 11166890 - 11166994
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11166890 aagttaaagacagattttacccttactttggtgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 11166989  T
Q  119 gagat 123  Q
    |||||    
T  11166990 gagat 11166994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 37381654 - 37381550
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37381654 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaata 37381555  T
Q  119 gagat 123  Q
    |||||    
T  37381554 gagat 37381550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 46387946 - 46388049
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46387946 aagttaaagacaaattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 46388045  T
Q  119 gaga 122  Q
    ||||    
T  46388046 gaga 46388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 4297274 - 4297378
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4297274 aagttaaagacagattttacccttactttggtgatttgtcaattaaccagactggggcattaataggatttccacaacatcttctcttcttatatcaaga 4297373  T
Q  119 gagat 123  Q
    |||||    
T  4297374 gagat 4297378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 7698940 - 7698840
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7698940 aagttaaagacagattttacccttactttg-tgatttgtcaattaaccaggctggggcattaatagga-ttccacaacatcttctcttcttatattaaga 7698843  T
Q  119 gag 121  Q
    |||    
T  7698842 gag 7698840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 21934268 - 21934354
Alignment:
Q  137 gcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaac-tacattcatagacctaggagatacaacatt 222  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||  |||||||| || |||||||| | ||||||    
T  21934268 gcaacaagctgcgccgctaaccctttttggatggcaaaaccaatcctcttaaatacaaacattcatggaactaggagacaaaacatt 21934354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 22346775 - 22346862
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||||||  ||| ||||||||||||||  ||||| ||||||||||||| ||||||| | || || ||||||||| ||||||||||    
T  22346775 aaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaactaatcctcgtgaacacaacattcataaacctaggaga 22346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 868628 - 868571
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcct 183  Q
    |||||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||||    
T  868628 aaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcct 868571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 5453976 - 5454057
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagaccta 208  Q
    ||||||||| |||| ||||||||||||||  ||||| |||||| |||||||||||||  |||| || |||||||| ||||||    
T  5453976 aggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattcatggaccta 5454057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 24177734 - 24177649
Alignment:
Q  130 caagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagata 215  Q
    |||||| |||| ||||||| ||||||  ||||| ||| ||||||||||||||||| | || || |||||||| |||||||||||||    
T  24177734 caagcgggcaacaagctgcaccgctagacctttttggttggcaaaaccaatcctcgtgaacacaacattcatggacctaggagata 24177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 21472886 - 21472970
Alignment:
Q  129 gcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||| |||||||| ||||||||||  ||||| ||||||||||||||| ||||| | ||  | |||||||| |||||||||||    
T  21472886 gcaagcgggcaataagttgcgccgctagacctttttggatggcaaaaccagtcctcctgaacgcaacattcatggacctaggaga 21472970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 30688439 - 30688523
Alignment:
Q  128 ggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggag 212  Q
    |||||||| |||| ||||||||||||||  ||||| |||||  |||||||||||||| |||| || |||||||| |||| |||||    
T  30688439 ggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatggacccaggag 30688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 2898598 - 2898657
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcat 201  Q
    ||||| ||||||||| ||||| |||||||||||| ||||||||||||| || ||||||||    
T  2898598 aagctacgccgctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcat 2898657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 7731070 - 7731107
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7731070 tttccacaatatcttctcttcttatattaagagagata 7731107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 41771215 - 41771182
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagaga 120  Q
    ||||||||||||||||||||||||||||||||||    
T  41771215 tttccacaacatcttctcttcttatattaagaga 41771182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 46323221 - 46323258
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46323221 tttccacaacatcttcccttcttatattaagagagata 46323258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 34644451 - 34644542
Alignment:
Q  131 aagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||| |||| || |||||||||||  | ||| |||||||||||| ||||| || |||| || |||||||| ||||||||||| | ||||||    
T  34644451 aagcgggcaacaaactgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctaggagacataacatt 34644542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 44420592 - 44420639
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaa 173  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||    
T  44420592 aaggcaagcgagcaacaaactgcgccgctaagcctttttggatggcaa 44420639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 45835380 - 45835330
Alignment:
Q  159 ctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctag 209  Q
    |||| |||||||||||| |||||||| |||| || ||||||||||||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacattcatagacctag 45835330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 31737533 - 31737465
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctagga 211  Q
    |||||||||||| || ||||| |||||||||||| |||||||| |||| |||| |||||| || ||||||    
T  31737533 aagctgcgccgccaagcctttttggatggcaaaatcaatcctcgtaaacacta-attcatggatctagga 31737465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 1114091 - 1114023
Alignment:
Q  130 caagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacatt 198  Q
    |||||| |||| |||||| |||| ||  ||||| ||||||||||||||||||||| |||| || |||||    
T  1114091 caagcgggcaacaagctgtgccgttagacctttttggatggcaaaaccaatcctcgtaaacacaacatt 1114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 2764375 - 2764455
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||||||||| ||||| ||||||| |||| ||||| || |||| || ||||| || |||||| |||| | ||||||    
T  2764375 aagctgcgccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacataacatt 2764455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 44843255 - 44843361
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaaga 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44843255 aagttaaagacaaattttacccttactttggtgatttgtcaattaaccaggttggggcattaataggatttccacaacatcttctcttcttatattaaga 44843354  T
Q  119 gagataa 125  Q
    |||||||    
T  44843355 gagataa 44843361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 37742063 - 37741967
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatatta 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742063 aagttaaagacagattttacctttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatatta 37741967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 28130785 - 28130868
Alignment:
Q  41 ttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28130785 ttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttttattaagagagata 28130868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 22589567 - 22589476
Alignment:
Q  122 ataaaaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||||| | || || ||||||||||||||| ||||    
T  22589567 ataaaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatagacctatgaga 22589476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 38815174 - 38815261
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||||| ||||||||||||| |||| || |||||||| |||||||||||    
T  38815174 aaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctaggaga 38815261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 3187853 - 3187946
Alignment:
Q  129 gcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||| |||||||||||||| ||| ||  ||||| ||||||||||||||||| ||| |||| || |||||||| ||||||||||| | ||||||    
T  3187853 gcaagtgagcaataagctgcaccgttagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacatt 3187946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 28130740 - 28130784
Alignment:
Q  19 aagttaaagacagattttacccttactttggtgatttgtcaatta 63  Q
    |||||||||  ||||||||||||||||||||||||||||||||||    
T  28130740 aagttaaagcgagattttacccttactttggtgatttgtcaatta 28130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 18804493 - 18804556
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||||||||  |||| ||||||||||||||  ||||| ||||||||||||||||||||| ||||    
T  18804493 aaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 18804556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 4699762 - 4699835
Alignment:
Q  137 gcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctagg 210  Q
    |||| |||||||||| |||| ||||| ||||||||||||| ||||||  |||| || |||||||| ||||||||    
T  4699762 gcaacaagctgcgccactaagcctttttggatggcaaaactaatccttgtaaacacaacattcatggacctagg 4699835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 39434557 - 39434622
Alignment:
Q  136 agcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcat 201  Q
    ||||| ||||||||||||||  ||||| |||||||||||| |||||||| |||| || ||||||||    
T  39434557 agcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcat 39434622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 26033723 - 26033676
Alignment:
Q  142 aagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||||||| |||||||||||| | |||| |||||||||||||||||||    
T  26033723 aagctgcgtcgctaatcctttttagatgacaaaaccaatcctcttaaa 26033676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 139267 - 139304
Alignment:
Q  167 atggcaaaaccaatcctcttaaaaactacattcataga 204  Q
    ||||||||||||||||||||||| || |||||||||||    
T  139267 atggcaaaaccaatcctcttaaatacaacattcataga 139304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 8882235 - 8882311
Alignment:
Q  137 gcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||| ||||||||||| ||| | ||| | ||||||||||  ||||||| |||| || |||||||| |||||||||||    
T  8882235 gcaacaagctgcgccgttaaacattttttgatggcaaaattaatcctcgtaaacacaacattcatggacctaggaga 8882311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 16945702 - 16945738
Alignment:
Q  153 ctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  16945702 ctaatcctttatgcatggcaaaatcaatcctcttaaa 16945738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 34298144 - 34298196
Alignment:
Q  138 caataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaa 190  Q
    ||||||| || || |||||  ||||||||| ||||||||||||||||||||||    
T  34298144 caataagttgtgctgctaacactttatggacggcaaaaccaatcctcttaaaa 34298196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 18273147 - 18273248
Alignment:
Q  22 ttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagag 121  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||  || ||||||||| |||||||||||||||| |||| ||||||||||||||    
T  18273147 ttaaagacagattttacccttactttgatgatttgtcaattaaccaagccaggacattaatagaatttccacaacatcttatctttttatattaagagag 18273246  T
Q  122 at 123  Q
    ||    
T  18273247 at 18273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 17249531 - 17249436
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||||| |||| || ||||||||  || ||||||| | ||||||    
T  17249531 aggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatgaacttaggagacataacatt 17249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 3137474 - 3137387
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    ||||||| || |||| ||| ||| | ||||| ||||| ||||||||||||||||||||| |||| || |||||||| |||||||||||    
T  3137474 aaggcaaacgggcaacaagttgcactgctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggaga 3137387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 30698603 - 30698640
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30698603 tttccacaacatcttctcttcttatattaagagagata 30698640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 7749362 - 7749441
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacc 206  Q
    ||||||||| |||| ||||||| ||||||  |||||  |||||||||||||||||||| |||| || |||||||| ||||    
T  7749362 aggcaagcgggcaacaagctgcaccgctagaccttttaggatggcaaaaccaatcctcgtaaacacaacattcatggacc 7749441  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 32291422 - 32291365
Alignment:
Q  166 gatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatta 223  Q
    |||||||||||   |||||||||||| | |||||||||||||| ||||||||||||||    
T  32291422 gatggcaaaacgggtcctcttaaaaattgcattcatagacctaagagatacaacatta 32291365  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 33220937 - 33220842
Alignment:
Q  127 aggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||||||||  ||| ||||||||||||||  |||||  ||||||||||||||||  || ||||  | |||||||| ||||||| ||| ||||||||    
T  33220937 aggcaagcggccaacaagctgcgccgctagaccttttaggatggcaaaaccaattatcgtaaacgcaacattcatggacctagaagacacaacatt 33220842  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 4206785 - 4206739
Alignment:
Q  164 tggatggcaaaaccaatcctcttaaaaactacattcatagacctagg 210  Q
    ||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  4206785 tggatggcaaaaccaatcctcgtaaacactatattcattgacctagg 4206739  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 959464 - 959557
Alignment:
Q  129 gcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    ||||||||| |||||| || || | ||  ||||| | |||| ||||| |||||||| |||| || |||||||| ||||||||||| ||||||||    
T  959464 gcaagcgagaaataagttgtgctgttaggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctaggagacacaacatt 959557  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 28625811 - 28625900
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagata 215  Q
    ||||||| || | |||||||||||||||||   |||| || ||||||||| |||||  | |||| || ||||||||||||||| ||||||    
T  28625811 aaggcaaacgggtaataagctgcgccgctagatctttttgaatggcaaaatcaatctccgtaaacacaacattcatagacctatgagata 28625900  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 5325901 - 5325873
Alignment:
Q  87 tttccacaacatcttctcttcttatatta 115  Q
    |||||||||||||||||||||||||||||    
T  5325901 tttccacaacatcttctcttcttatatta 5325873  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 34304399 - 34304463
Alignment:
Q  149 gccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||  ||||| ||||| |||||| |||||||| |||| || ||||||||||||||| ||||    
T  34304399 gccgctatacctttttggattgcaaaatcaatcctcgtaaatacaacattcatagacctatgaga 34304463  T

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Target: scaffold0009 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 102986 - 103082
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggagatacaacatt 222  Q
    |||||||||| |||| ||| ||||||||||  ||||| ||||||||||||||||||||| |||| || |||||||| ||||||||||| || |||||    
T  102986 aaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacacgacatt 103082  T

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Target: scaffold2013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 758 - 721
Alignment:
Q  87 tttccacaacatcttctcttcttatattaagagagata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  758 tttccacaacatcttctcttcttatattaagagagata 721  T

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Target: scaffold0406 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 6768 - 6831
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaa 189  Q
    |||||||||| |||| |||||||| |||||  ||||| ||||||||||||||||| ||| ||||    
T  6768 aaggcaagcgggcaacaagctgcggcgctagacctttttggatggcaaaaccaattctcgtaaa 6831  T

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Target: scaffold0148 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 33130 - 33217
Alignment:
Q  126 aaggcaagcgagcaataagctgcgccgctaatcctttatggatggcaaaaccaatcctcttaaaaactacattcatagacctaggaga 213  Q
    |||||||||  |||| ||||||| |||| || ||||| |||||| ||||| |||||||| |||| || || ||||| |||||||||||    
T  33130 aaggcaagcaggcaacaagctgcaccgccaagcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctaggaga 33217  T

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