View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6052_low_6 (Length: 282)
Name: NF6052_low_6
Description: NF6052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6052_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 29287251 - 29287105
Alignment:
| Q |
11 |
atcatcaaatgggtcaccc-aatcgtgtttatggcatgtgcaatgtgttatcaaagttcatatatgaaacaatacttaattttatgaaaattttcaaact |
109 |
Q |
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| T |
29287251 |
atcatcaaatgggtcaccccaatcgtgtttatggcatgtgcaatgtgttatcaaagttcatatatgaaacaatatttaattttatgaaaattttcaaact |
29287152 |
T |
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| Q |
110 |
taaatgcagtagcttaaatttgtcccttgttcaatttagattctcta |
156 |
Q |
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| T |
29287151 |
taaatgcagtagcttaaatttgtcccttgttcaatttagattctcta |
29287105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 29284859 - 29284743
Alignment:
| Q |
157 |
gttgcaattgtgcgatttaaaccttatttttacaccttttctcatttactagcctctcgtgcacattttgactaagaaaatagacttgtccattatttcc |
256 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29284859 |
gttgcaattgtgcgatttaaaccttatttttaccccttttctcatttactagcctctcgtgcacattttgactaagaaaatagacatgtccattatttcc |
29284760 |
T |
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| Q |
257 |
aggtgcttgattatatt |
273 |
Q |
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| T |
29284759 |
aggtgcttgattatatt |
29284743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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