View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_high_1 (Length: 848)
Name: NF6053_high_1
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 706; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 19 - 823
Target Start/End: Original strand, 40893587 - 40894392
Alignment:
| Q |
19 |
aaataacctaaatcttcacaacctctcaaatgtagaatccatgacttttcaattttcttacaaaaactctacaatcatt-cctttagatccatcttctca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40893587 |
aaataacctaaatcttcacaacctctcaaacatagaatccatgacttttcaatcttcttacaaaaactctacaatcatttcctttagatccatcttctca |
40893686 |
T |
|
| Q |
118 |
ccctcttaaacctagaattcatttggaagaggagattttcacattcataatttctactcatatttagaagaagactaaaatttggtaccattgttttaat |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893687 |
ccctcttaaacctagaattcatcaggaagaggagattttcacattcataatttctactcatatttagaagaagactaaaatttggtaccattgttttaat |
40893786 |
T |
|
| Q |
218 |
ttatactatctccgatacttcttttatgagatccttatttcgtaattctcatatgggttttgaactaatggtgtttaggtctttgtttctggtatcaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40893787 |
ttatactatctccgatacttcttttatgagatccttatttcgaaattctcatatgggttttgaactaatggtgtttaggtctttgtttttggtatcaaat |
40893886 |
T |
|
| Q |
318 |
ctgaatctctttgatagagttatggttttgtgggttttggttttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaa |
417 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893887 |
ctgaatctctttgatagacttatggttttgtgggttttggttttgagctgactgaaggaactactgtcaccccattcactcacccatcttcatttttaaa |
40893986 |
T |
|
| Q |
418 |
ttgaatttcatattggaggatttctggttgtttgtttcagggagcttggactattttaggagttgtttgtctgtttcnnnnnnnnctctctcgccatttc |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
40893987 |
ttgaatttcatattggaggatttctggttgtttgtttcagggagcttgaactatttcaggagttgtttgtctgtttcttttttttttctctcgccatttc |
40894086 |
T |
|
| Q |
518 |
agcttcaaatttgcgtttgatttttcatttagggagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgtgtctcagaattatgtgg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894087 |
agcttcaaatttgcgtttgatttttcatttaggaagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgtgtctcagaattatgtgg |
40894186 |
T |
|
| Q |
618 |
tttctgtacatatggagctacaaaaaccatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattaggacccaaaagttgtcttat |
717 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894187 |
tttgtgtacatatggagctacaaaaatcatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattaggacccaaaagttgtcttat |
40894286 |
T |
|
| Q |
718 |
gagaaaaggatgaactttgatttacattatttacttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaat |
817 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894287 |
gagaaaatgatgaactttgatttacattatttacttttgttgttaattttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaat |
40894386 |
T |
|
| Q |
818 |
ttagaa |
823 |
Q |
| |
|
|||||| |
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|
| T |
40894387 |
ttagaa |
40894392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 31621235 - 31621330
Alignment:
| Q |
359 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
454 |
Q |
| |
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||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||| || || ||||| ||||| |
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| T |
31621235 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
31621330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 36666918 - 36667014
Alignment:
| Q |
359 |
tttgagctgactgaatgaactactgtcacccc-attcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
454 |
Q |
| |
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||||| ||||||||| ||||||| ||| |||| |||||||||| ||||||||||| ||||||||||||| |||||||| || || ||||| ||||| |
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| T |
36666918 |
tttgaactgactgaaggaactaccgtcccccccattcactcactcatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
36667014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 823
Target Start/End: Original strand, 36668704 - 36668776
Alignment:
| Q |
751 |
cttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
823 |
Q |
| |
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|||||||||||||| || || | |||||||||| ||||| |||||||||| |||||||| |||||||||||| |
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| T |
36668704 |
cttttgttgttaattttttgggttttttaaatctttcttgaatttggttatagagttttgagaaaatttagaa |
36668776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 823
Target Start/End: Original strand, 31621655 - 31621726
Alignment:
| Q |
751 |
cttttgttgttaatcttatgtggttttt-aaatcgttcttctatttggttatggagttttgggaaaatttagaa |
823 |
Q |
| |
|
|||||||||||||| || || ||||||| ||||| |||||| ||||||||| |||||||| |||||||||||| |
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|
| T |
31621655 |
cttttgttgttaattttttggggttttttaaatctttcttcaatttggtta--gagttttgagaaaatttagaa |
31621726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 36574895 - 36574828
Alignment:
| Q |
359 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttc |
426 |
Q |
| |
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||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
36574895 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttc |
36574828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 26530441 - 26530346
Alignment:
| Q |
359 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
454 |
Q |
| |
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||||||| ||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||| || || ||||| ||||| |
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| T |
26530441 |
tttgagccgactgaaggaactatcgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttgcttgttgtctgttt |
26530346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 774 - 823
Target Start/End: Complemental strand, 26529995 - 26529946
Alignment:
| Q |
774 |
tttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
823 |
Q |
| |
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|||||||||| |||||| |||||||||| |||||||| |||||||||||| |
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|
| T |
26529995 |
tttttaaatctttcttcaatttggttatagagttttgagaaaatttagaa |
26529946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 821
Target Start/End: Original strand, 17330762 - 17330831
Alignment:
| Q |
752 |
ttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttag |
821 |
Q |
| |
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|||||| || ||| ||||| | ||| |||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
17330762 |
ttttgtggtcaattttatgcgatttctaaatctttcttctatttggttatggaaatttgagaaaatttag |
17330831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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