View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_high_17 (Length: 309)
Name: NF6053_high_17
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 228523 - 228244
Alignment:
| Q |
19 |
acctattacatttcccaacagtcacagctggaaatgtgacatcaatttgatacttacttgattattctttcttagagttcaatgtgccnnnnnnnnngtc |
118 |
Q |
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| T |
228523 |
acctattacatttcccaacagtcacagctggaaatgtgacatcaatttgatacttacttgattattctttcttagagttcaatgtgccaaaaaaat-gtc |
228425 |
T |
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| Q |
119 |
atttttattcctgttacctgtgattgcttttatattattgaaactgcatatgcattgctaggttttggttttttaggcttttcagagagtatgtatgcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
228424 |
atttttattcctgttacctgtgattgcttttatattattgaaactgcatatgcattgctaggttttggttttttaggcttttcagagagtatgtatgcca |
228325 |
T |
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| Q |
219 |
atataactatacttcatccttgatgaagaactaataatgtatcttgaacatgacacatgctttaacagtttagctttcatc |
299 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
228324 |
atataactatacttcatccttgatgaagaactaattatgtatcttgaacatgacacatgctttaacagtttagctttcatc |
228244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 73 - 299
Target Start/End: Complemental strand, 239327 - 239105
Alignment:
| Q |
73 |
tacttgattattctttcttagagttcaatgtgccnnnnnnnnngtcatttttattcctgttacctgtgattgcttttatattattgaaactgcatatgca |
172 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
239327 |
tacttgattattctttcttagagttcaatgtgccaaaataaatgtcatttttattcctgttaccagtgattgcttttatattattgaaactgcatatgca |
239228 |
T |
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| Q |
173 |
ttgctaggttttggttttttaggcttttcagagagtatgtatgccaatataactatacttcatccttgatgaagaactaataatgtatcttgaacatgac |
272 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
239227 |
ttgctagaatttggttttttaggcttttcagagagtatga----caatataactatacctcatcctggatgaagaactaataatgtatcttgaacatgac |
239132 |
T |
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| Q |
273 |
acatgctttaacagtttagctttcatc |
299 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
239131 |
acatgctttaacagtttagccttcatc |
239105 |
T |
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