View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6053_high_20 (Length: 293)

Name: NF6053_high_20
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6053_high_20
NF6053_high_20
[»] chr1 (1 HSPs)
chr1 (14-293)||(46079016-46079295)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 46079016 - 46079295
Alignment:
Q  14 atatctgatcttatgtgctagtaaaaacatgattgaaatgataaaggagattgacacattaattttagactagtaggcaacaatcttatcaggaacattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079016 atatctgatcttatgtgctagtaaaaacatgattgaaatgataaaggagattgacacattaattttagactagtaggcaacaatcttatcaggaacattg 46079115  T
Q  114 tggctttatgtatgtttagtcttaaactcaattaaagtatgaaatgaaataccactaatggcatgatttgagtaattttgctagaaagtacaactcctgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079116 tggctttatgtatgtttagtcttaaactcaattaaagtatgaaatgaaataccactaatggcatgatttgagtaattttgctagaaagtacaactcctgt 46079215  T
Q  214 ctttcaccaaaaaggttaaggaattgagtggtgtattcacatggaatggaaaggtgtaccccggccacaagagtggggaa 293  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46079216 ctttcaccaaaaaggttaaggaattgagtggtgtcttcacatggaatggaaaggtgtaccccggccacaagagtggggaa 46079295  T

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