View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_high_29 (Length: 251)
Name: NF6053_high_29
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 9720926 - 9721133
Alignment:
| Q |
10 |
gcagagacatcatatttcgagtcaggtacaaaactcttatgttgtttgaatataacattttaggctaaacattatcacaaactttatgaaaaagttgtaa |
109 |
Q |
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| T |
9720926 |
gcagagacatcatatttcgagtcaggtacaaaactct-atgttgtttgaatataacattttaggctaaacattatcataaactttatgaaaaagttgtca |
9721024 |
T |
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| Q |
110 |
tttggtgactcaaaatagtaaga--aaagagtacaataatgaagttaaagtattctcaaaggaaagaaaatagtgagaaccgttcacattagtaactgca |
207 |
Q |
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| T |
9721025 |
tttggtgactcaaaatagtaagaatagagagtacaataatgaagttagagtattctgaaaggaaagaaaatagtgagaactgttcacattagtaactgca |
9721124 |
T |
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| Q |
208 |
atgcactaa |
216 |
Q |
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| T |
9721125 |
atgcactaa |
9721133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 9718880 - 9718960
Alignment:
| Q |
46 |
ttatgttgtttgaatataacatt--tta--ggctaaacattatcacaaactttatgaaaaagttgtaatttggtgactcaaa |
123 |
Q |
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| T |
9718880 |
ttatgttgtttgaatataacgttacttacgggttaatcactatcacaaactttatgaaaa-gttgtaattttgtgactcaaa |
9718960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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