View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6053_high_30 (Length: 250)
Name: NF6053_high_30
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 3941667 - 3941900
Alignment:
| Q |
13 |
aatattgatgaaaatgtaacttgtgttttttcaatgagttactttctcttaaggaataggggtgacattgaaaggaaatgaagtcatagttgatctcctc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3941667 |
aatattgatgaaaatgcaacttgtgttttttcaatgagttactttctcttaaggaataggggtgacattgaaaggaaatgaagtcatagtcgatctcctc |
3941766 |
T |
|
| Q |
113 |
cctcatctagtgatccttatttctctgtaaaaacttgtgnnnnnnnnnnacttaggaaattaaataaaactgcaagatcaattgttgttattatatttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3941767 |
cctcatctagtgatccttatttctctgt-aaaacttgtg-tttttttttacttaggaaattaaataaaactgcaagatcaattgttgttattatctttga |
3941864 |
T |
|
| Q |
213 |
gaaattaataaaataggagtcatatggaagttgtgt |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3941865 |
gaaaataataaaataggagtcatatggaagttgtgt |
3941900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University