View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_high_6 (Length: 463)
Name: NF6053_high_6
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 69 - 421
Target Start/End: Original strand, 3942184 - 3942535
Alignment:
| Q |
69 |
ttgataacacactctttttaaaaatgagttggtggacgtttgaaaatgtctactaccaactgctaatgtgcaccccgcctattttagaatatgtagttag |
168 |
Q |
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| T |
3942184 |
ttgataacacactctttttaaaactgagttggtgcacgtttgtaaatttctactaccaactgctaatgtgcaccccacctattttagaatttgtagttag |
3942283 |
T |
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| Q |
169 |
aaggagtgcattaaccaattataaataaataatgactaaaaatactcaaatccacagctttgctataaaactcattctnnnnnnnnnnnnctagtggttc |
268 |
Q |
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| T |
3942284 |
aaggagtgcattaaccaattataaataaataatggctaaaaatactcaaatccacagctttgctataaaactcattc-aaaaaaaaaaaactagtggttc |
3942382 |
T |
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| Q |
269 |
tatattaacaatccctcaagactgacaatgaactggacttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagcttcgaatagtttaacc |
368 |
Q |
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| T |
3942383 |
tatattaacaatccctcaagactgacaatgaactggacttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagctacgaatagtttaacc |
3942482 |
T |
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| Q |
369 |
gtttgattgatgaactagctatgtaagtttgtcaaaatgtggcgacgtggaaa |
421 |
Q |
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| T |
3942483 |
gtttgattgatgaactaactatgtaagtttgtcaaaatgtggcgacgtggaaa |
3942535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 3942123 - 3942164
Alignment:
| Q |
29 |
gccttttcaaagtttgatttgtcaatttcattagactagttt |
70 |
Q |
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| T |
3942123 |
gccttttcaaagtttgatttgtcaatttcattggactagttt |
3942164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 24007998 - 24008046
Alignment:
| Q |
305 |
acttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagct |
353 |
Q |
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| T |
24007998 |
acttgagtttaaaattaagttcgttaaataaatgagttgaacttgagct |
24008046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 28265768 - 28265812
Alignment:
| Q |
308 |
tgagtttaaaattacgttcgtcaaataaatatgttgaacttgagc |
352 |
Q |
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| T |
28265768 |
tgagtttaaaattaagttcgtcaaacaaatgagttgaacttgagc |
28265812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 48575175 - 48575221
Alignment:
| Q |
305 |
acttgagtttaaaattacgttcgtcaaataaatatgttgaacttgag |
351 |
Q |
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| T |
48575175 |
acttgaatttaaaattaagttcgtcaaataaatgagttgaacttgag |
48575221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 453532 - 453480
Alignment:
| Q |
301 |
ctggacttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagct |
353 |
Q |
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| T |
453532 |
ctggacttgagttgaaaattaagttcgttaattaaatgagttgaacttgagct |
453480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 1091769 - 1091725
Alignment:
| Q |
308 |
tgagtttaaaattacgttcgtcaaataaatatgttgaacttgagc |
352 |
Q |
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| T |
1091769 |
tgagtttaaaattaagttcgtcaaacaaatgagttgaacttgagc |
1091725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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