View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6053_high_9 (Length: 434)

Name: NF6053_high_9
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6053_high_9
NF6053_high_9
[»] chr6 (4 HSPs)
chr6 (7-275)||(19305851-19306123)
chr6 (7-275)||(10122332-10122611)
chr6 (206-275)||(10126551-10126620)
chr6 (206-260)||(19310337-19310391)
[»] chr1 (13 HSPs)
chr1 (7-275)||(28244199-28244479)
chr1 (7-275)||(11476555-11476853)
chr1 (206-275)||(11318763-11318832)
chr1 (206-275)||(11471322-11471391)
chr1 (296-339)||(45214944-45214987)
chr1 (206-275)||(17430769-17430839)
chr1 (206-260)||(17431703-17431757)
chr1 (206-275)||(50017608-50017677)
chr1 (13-114)||(17431502-17431601)
chr1 (52-107)||(11318579-11318633)
chr1 (213-260)||(50027519-50027566)
chr1 (63-116)||(50017778-50017830)
chr1 (124-164)||(11318671-11318711)
[»] chr7 (4 HSPs)
chr7 (7-275)||(22489252-22489532)
chr7 (206-271)||(22492408-22492473)
chr7 (206-275)||(48944292-48944361)
chr7 (207-251)||(48072491-48072535)
[»] chr2 (6 HSPs)
chr2 (207-275)||(43159350-43159418)
chr2 (206-275)||(38250105-38250174)
chr2 (206-275)||(38255469-38255538)
chr2 (207-275)||(43154102-43154170)
chr2 (7-107)||(38250304-38250409)
chr2 (7-107)||(43159116-43159221)
[»] chr5 (7 HSPs)
chr5 (74-275)||(25383924-25384134)
chr5 (206-267)||(25482726-25482787)
chr5 (206-275)||(25379448-25379517)
chr5 (206-253)||(25484266-25484313)
chr5 (207-253)||(10292976-10293022)
chr5 (12-49)||(25383881-25383918)
chr5 (212-275)||(23231600-23231664)
[»] chr4 (5 HSPs)
chr4 (206-275)||(28167592-28167662)
chr4 (206-271)||(54362234-54362300)
chr4 (214-275)||(48792819-48792880)
chr4 (206-273)||(28166913-28166981)
chr4 (211-251)||(48796046-48796086)
[»] chr3 (2 HSPs)
chr3 (16-114)||(33862946-33863043)
chr3 (206-259)||(33862375-33862428)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 19306123 - 19305851
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttgaaggtgggtg 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  19306123 gcaggagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcg-gagaaaagttgatggtgggtg 19306025  T
Q  107 gtgggttcatcgtaggagagaagagaagaggaatgggtttttgagttttcac-tgttct----atcgtgttctcttattctcatttaattaaannnnnnn 201  Q
    |||||||| |||||   |||||||||||||||||| |||||| | ||||||| ||||||     ||  |||||||||||||| ||||||| |            
T  19306024 gtgggttcgtcgtacaggagaagagaagaggaatgcgttttttatttttcacttgttctcttagtcacgttctcttattctcctttaattgatttttttt 19305925  T
Q  202 nnnnaaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
        ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19305924 ttaaaaaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 19305851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 10122611 - 10122332
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttga----aggtg 102  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||     ||||    
T  10122611 gcaggagagaaagtgaagaggaacgatggccgttggcggagaggacggcgacggcggaggtaagtgtcggcggtggcg-gagaaaagttgatggtgggtg 10122513  T
Q  103 ggtggtgggttcatcgtaggagagaagagaagaggaatgggtttttgagttttcactgttctat------cgtgt--tctcttattctcatttaattaaa 194  Q
    |||||||||||| |||||   |||||| ||||||||||| |||||||| |||||||| |||| |      |||||  |||||||||||| ||||||| |     
T  10122512 ggtggtgggttcgtcgtactggagaagtgaagaggaatgcgtttttgatttttcactcttctctcagtcacgtgttctctcttattctcctttaattgat 10122413  T
Q  195 nnnnnnnnnnnaaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
               ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  10122412 ttttttttttaaaaagggtgtgccacgtggcacaccctgattggacaatgttatataacataaaatacccaatgttacaca 10122332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 10126551 - 10126620
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  10126551 aaaagggtgtgccacgtggcacacccttattggacaatgttatataacataaaatccactatgttacaca 10126620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 19310337 - 19310391
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 260  Q
    |||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  19310337 aaaaaggtgtgccacgtggcacatccttattggacaatgttatataacataaaat 19310391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 28244479 - 28244199
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttga----aggtg 102  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||     ||||    
T  28244479 gcaggagagaaagtgaagaggaacgatggccgttggcggagaggacagcggcgacggagggaagtgtcggcggtggcg-gagaaaagttgatggtgggtg 28244381  T
Q  103 ggtggtgggttcatcgtaggagagaagagaagaggaatgggtttttgagttttcactgttctat------cgtgt--tctcttattctcatttaattaaa 194  Q
    |||||||||||| |||||   |||||||||||||||||| |||||||| |||||||| |||| |      |||||  |||||||||||| |||||||  |    
T  28244380 ggtggtgggttcgtcgtactggagaagagaagaggaatgcgtttttgatttttcactcttctctcagtcacgtgttctctcttattctcctttaatt-ga 28244282  T
Q  195 nnnnnnnnnnnaaaagggtgtgcc--acgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
               |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28244281 ttttttttttaaaaagggtgtgccatacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 28244199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 11476555 - 11476853
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttgaaggtg---- 102  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||| ||||        
T  11476555 gcagaagagaaagtgaagaggaacggtggccgttggcggagaggacggcggtggcggagggaagcgtcggcggtgggg-gagaaaagttgatggtgggtg 11476653  T
Q  103 ----ggtggtgggttcatcgta--ggaga-----------gaagagaagaggaatgggtttttgagttttcactgttctatc------gtgttctct--t 177  Q
        |||||||||||| |||||  |||||           |||||||||||||||| |||||||| |||||||| |||| ||      |||||||||  |    
T  11476654 ggtgggtggtgggttcgtcgtactggagaagagaagaggagaagagaagaggaatgtgtttttgatttttcactcttctctcagtcacgtgttctctctt 11476753  T
Q  178 attctcatttaattaaannnnnnnnnnn--aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||| ||||||| ||             |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11476754 attctcctttaattgaatttttttttttttaaaagggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11476853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 11318763 - 11318832
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11318763 aaaagggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 11471391 - 11471322
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  11471391 aaaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 11471322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 45214987 - 45214944
Alignment:
Q  296 cattgctattgccactggtccatcctgatcctcctctattacac 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45214987 cattgctattgccactggtccatcctgatcctcctctattacac 45214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 17430839 - 17430769
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat-acccaatgttacaca 275  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||||| ||||||  ||||||||||||||    
T  17430839 aaaatggtgtgccacgtggcacatcctgattggacaatattatataacataaaatgccccaatgttacaca 17430769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 17431703 - 17431757
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 260  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  17431703 aaaaaggtgtgccacatggcacaccctgattggacaatgttatataacataaaat 17431757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 50017677 - 50017608
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  50017677 aaaagggtgtgccacgtggcatatccttattggacaatgttatataacataaaatccactatgttacaca 50017608  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 17431502 - 17431601
Alignment:
Q  13 gagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttgaaggtgggtggtgggt 112  Q
    ||||||| ||||||||| |||||||| |||||||||||| | |||||| ||| |||  | |||||||||||| ||| | |||||| ||||||||||| ||    
T  17431502 gagaaagagaagaggaaaggtggtcgatggcggagaggaggacggcggagga-ggagatatcggcggtggcg-gaggatagttgatggtgggtggtgagt 17431599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 11318579 - 11318633
Alignment:
Q  52 cggcggcggcggagggaagtgtcggcggtggcgagagaaaagttgaaggtgggtgg 107  Q
    |||||| |||||||||||| ||||||||||| | |||||||||||| |||||||||    
T  11318579 cggcggaggcggagggaagcgtcggcggtgg-gggagaaaagttgatggtgggtgg 11318633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 50027519 - 50027566
Alignment:
Q  213 tgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 260  Q
    |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  50027519 tgtgccacgtggcacaccttgattgggcaatattacataacataaaat 50027566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 50017830 - 50017778
Alignment:
Q  63 gagggaagtgtcggcggtggcgagagaaaagttgaaggtgggtggtgggttcat 116  Q
    |||||| ||||||||||||||| ||| | |||||||||||||||||| ||||||    
T  50017830 gagggaggtgtcggcggtggcg-gaggatagttgaaggtgggtggtgagttcat 50017778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 11318671 - 11318711
Alignment:
Q  124 gagaagagaagaggaatgggtttttgagttttcactgttct 164  Q
    |||||||||||||||||| |||||||| |||||||| ||||    
T  11318671 gagaagagaagaggaatgtgtttttgatttttcactcttct 11318711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 22489532 - 22489252
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttgaaggtgggtg 106  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||| |  |||| |||||||| ||||||||||||||| |||||||| ||| ||||||||    
T  22489532 gcaggagagaaagtgaagaggaacggtggtcgatggtggagaggaggatggcgacggagggaggtgtcggcggtggcg-gagaaaag-tgatggtgggtg 22489435  T
Q  107 gtgggttc----atcgtaggagagaagagaagaggaatgggtttttgagttttcac-tgttctat------cgtgttctcttattctcatttaattaa-- 193  Q
    ||||||||     ||||||| |||||||||| |||| || |||||||||||||||| |||||| |      ||||||||||||||||| ||||||| |      
T  22489434 gtgggttctgatgtcgtaggggagaagagaataggactgcgtttttgagttttcacttgttctctgagtcacgtgttctcttattctcctttaattgagt 22489335  T
Q  194 -annnnnnnnnnnaaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
                 ||||||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22489334 tttttttatagaaaaaagggtgtgccgcatggcacaccctgattgaacaatgttatataacttaaaatacccaatgttacaca 22489252  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 22492408 - 22492473
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgtta 271  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22492408 aaaagggtgtgccacgtggcacatcctgattgggcaatgttatataacttaaaatacccaatgtta 22492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 48944361 - 48944292
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||| |||||||||||||||||||||||| ||  |||||||||||||| ||||||  |||||||||||||    
T  48944361 aaaaaggtgtgccacgtggcacaccctgactgaacaatgttatataacataaaatgtccaatgttacaca 48944292  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 48072491 - 48072535
Alignment:
Q  207 aaagggtgtgccacgtggcacaccctgattgggcaatgttatata 251  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||    
T  48072491 aaagggtgtgccacgtggcacattctaattgggcaatggtatata 48072535  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 43159350 - 43159418
Alignment:
Q  207 aaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43159350 aaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 43159418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 38250174 - 38250105
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38250174 aaaagggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 38250105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 38255469 - 38255538
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  38255469 aaaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 38255538  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 43154170 - 43154102
Alignment:
Q  207 aaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  43154170 aaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 43154102  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 38250409 - 38250304
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcg------gagggaagtgtcggcggtggcgagagaaaagttgaagg 100  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||      |||||||| ||||||||||| | |||||||||||| ||    
T  38250409 gcagaagagaaagtgaagaggaacggtggccgttggtggagaggacggcggcggcggaggcggagggaagcgtcggcggtgg-gggagaaaagttgatgg 38250311  T
Q  101 tgggtgg 107  Q
    |||||||    
T  38250310 tgggtgg 38250304  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 43159116 - 43159221
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagg------gaagtgtcggcggtggcgagagaaaagttgaagg 100  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||      |||| ||||||||||| | |||||||||||| ||    
T  43159116 gcagaagagaaagtgaagaggaacggtggccgttggtggagaggacggcggcggcggaggcggagggaagcgtcggcggtgggg-gagaaaagttgatgg 43159214  T
Q  101 tgggtgg 107  Q
    |||||||    
T  43159215 tgggtgg 43159221  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 74 - 275
Target Start/End: Original strand, 25383924 - 25384134
Alignment:
Q  74 cggcggtggcgagagaaaagttgaaggtgggtggtgggttca----tcgtaggagagaagagaagaggaatgggtttttgagttttcact-gttctatc- 167  Q
    ||||||||||| |||||||||| | ||||||||||||||||     ||| ||| |||||||||||||||||| |||||||||||||| || ||||| ||     
T  25383924 cggcggtggcg-gagaaaagttaatggtgggtggtgggttctgatgtcgcaggggagaagagaagaggaatgcgtttttgagttttcgcttgttctctca 25384022  T
Q  168 -----gtgttctcttattctcatttaattaaannnnnnnnnnnaaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatac 262  Q
         ||||||| |||||||| ||||||| |            ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  25384023 gtcacgtgttcttttattctcctttaattga-tttttttttttaaaagggtgtgccacgtggcacaccctgattggaccatgttatataacttaaaatac 25384121  T
Q  263 ccaatgttacaca 275  Q
    |||||||||||||    
T  25384122 ccaatgttacaca 25384134  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 25482787 - 25482726
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaat 267  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  25482787 aaaagggtgtgccatgtggcacatcctaattgggcaatgttatataacttaaaatatccaat 25482726  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 25379517 - 25379448
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  25379517 aaaagggtgtgccatgtggcacacccttattggacaatgttatataacataaaatccactatgttacaca 25379448  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 25484266 - 25484313
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataac 253  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  25484266 aaaaggatgtgccacgtggcacacccttattggacaatgttatataac 25484313  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 10292976 - 10293022
Alignment:
Q  207 aaagggtgtgccacgtggcacaccctgattgggcaatgttatataac 253  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||    
T  10292976 aaagggtgtgccacgtggcacaccttaattggccaatgttatataac 10293022  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 25383881 - 25383918
Alignment:
Q  12 agagaaagtgaagaggaacggtggtcgttggcggagag 49  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  25383881 agagaaagtgaagagaaacggtggtcgttggcggagag 25383918  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 23231600 - 23231664
Alignment:
Q  212 gtgtgcca-cgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||| ||||| ||||| ||||||| ||||||||| |||| ||||||  |||||||||||||    
T  23231600 gtgtgccatcgtggtacaccttgattggacaatgttatgtaacataaaatggccaatgttacaca 23231664  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 28167592 - 28167662
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgttacaca 275  Q
    |||||||||||| |||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||||    
T  28167592 aaaagggtgtgcgacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttacaca 28167662  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 54362300 - 54362234
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgtta 271  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| | ||||| ||||||||||    
T  54362300 aaaagggtgtgccatgtggcacaccctgattaggcaatgttatataacataaaaatgcccaatgtta 54362234  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 48792880 - 48792819
Alignment:
Q  214 gtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 275  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||   ||||||||||||    
T  48792880 gtgccacgtggcacaccctgattgggcaatgttatataccataaaatggtcaatgttacaca 48792819  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 28166981 - 28166913
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgttaca 273  Q
    |||| |||||||||||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||    
T  28166981 aaaaaggtgtgccacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttaca 28166913  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 48796046 - 48796086
Alignment:
Q  211 ggtgtgccacgtggcacaccctgattgggcaatgttatata 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796046 ggtgtgccacgtggcacaccctgattgggcaatgttatata 48796086  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 33862946 - 33863043
Alignment:
Q  16 aaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcgagagaaaagttgaaggtgggtggtgggttc 114  Q
    |||| |||||||||| ||||||| || | ||||||| | |||||| ||||||| ||||||||||||||| |||||||||||| ||| ||| ||||||||    
T  33862946 aaagagaagaggaacagtggtcgatgacagagaggaggacggcggtggagggaggtgtcggcggtggcg-gagaaaagttgatggtaggttgtgggttc 33863043  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 33862428 - 33862375
Alignment:
Q  206 aaaagggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaa 259  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||| |||||    
T  33862428 aaaagggtgtgccatgtggcacaccctgaatgggcagtgttatataacataaaa 33862375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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