View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_10 (Length: 431)
Name: NF6053_low_10
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 5 - 431
Target Start/End: Complemental strand, 41993144 - 41992732
Alignment:
| Q |
5 |
tctccaataatatccaagtcgtcagctatttacaccccaccatgaatcaaaggaagaagctaaagaagnnnnnnnnnnnnnnnnnnnntagaaagaacca |
104 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41993144 |
tctcccataatatccaagccgtcagctatttacaccccaccatgaatcaaaggaagaagctaaagaa---------------aaaaaatagaaagaacca |
41993060 |
T |
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| Q |
105 |
atcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgtttggttgaacggtggac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993059 |
atcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgtttggttgaacggtggac |
41992960 |
T |
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| Q |
205 |
actgctaccacgagttcaaagctctctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccgcga-ttttagtgttt |
303 |
Q |
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| T |
41992959 |
actgctaccacgagttcaaagcactctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccgcgatttttagtgttt |
41992860 |
T |
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| Q |
304 |
accaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctccttaaggactc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41992859 |
accaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctccttaaggactc |
41992760 |
T |
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| Q |
404 |
ctccaagtcctctactagatgatgatga |
431 |
Q |
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| T |
41992759 |
ctccaagtcctctactagatgatgatga |
41992732 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 22020954 - 22021040
Alignment:
| Q |
328 |
tactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctccttaaggactcctccaagtcct |
414 |
Q |
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| T |
22020954 |
tactcatgccaacaaaggagcatgatcacacatctcctaattatgtatagccttgccctttgctctctaagtactcccccaaatcct |
22021040 |
T |
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