View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_11 (Length: 431)
Name: NF6053_low_11
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 10427739 - 10427908
Alignment:
| Q |
8 |
agataattctatacgattagtataatatcttttgggtgaaatggaatgaagttcattcatatcatcaatcacatgatcaatatatttatagaagtgagta |
107 |
Q |
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| T |
10427739 |
agataattctatacgattagtataatatcttttgggtgaaatggaatgaagttcattcatatcatcaatcacatgatcaatatatttatagaagtgagta |
10427838 |
T |
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| Q |
108 |
cttatatgacgagttgagatgtgttatgctagatgtcctaaaaatttgatcggataaataacttttcatt |
177 |
Q |
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| T |
10427839 |
cttatatgacgagttgagatgtgttatgctagatgtcctaaaaatttgatcggataaataacttttcatt |
10427908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 183 - 414
Target Start/End: Original strand, 10431205 - 10431427
Alignment:
| Q |
183 |
agtgacaaatgttacgttgtaagtaggaaggtatgttagtagtttttgacatagaattgaggacctattgcttatttatccatttattttataggtttac |
282 |
Q |
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| T |
10431205 |
agtgacaaatgttacgttgtaagtaggaaggtatgttagt---ttttga------attgagaacctattgcttatttatccatttattttataggtttac |
10431295 |
T |
|
| Q |
283 |
ttttatgtatcgttttcgacagatgtaatcactttcttcttagcaaatagatttatattattaatgacaaaaatgtaaacgctaacttgtgtcctcaata |
382 |
Q |
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| T |
10431296 |
ttttatgtattgttttcgacagatgtaatcactttcttcctagcaaatagaattgtattattaataacaaaaatgtaaacgctaacttgtgtcctcaata |
10431395 |
T |
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| Q |
383 |
tcacattttaagaaattcattatagaaatata |
414 |
Q |
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| T |
10431396 |
tcacattttaagaaactcattatagaaatata |
10431427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 55158584 - 55158535
Alignment:
| Q |
365 |
taacttgtgtcctcaatatcacattttaagaaattcattatagaaatata |
414 |
Q |
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| T |
55158584 |
taacttgtgccctcaatagcacatgttaagaaatttattatagaaatata |
55158535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 26081132 - 26081081
Alignment:
| Q |
363 |
gctaacttgtgtcctcaatatcacattttaagaaattcattatagaaatata |
414 |
Q |
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| T |
26081132 |
gctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatata |
26081081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 26104919 - 26104868
Alignment:
| Q |
363 |
gctaacttgtgtcctcaatatcacattttaagaaattcattatagaaatata |
414 |
Q |
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| T |
26104919 |
gctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatata |
26104868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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