View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_12 (Length: 424)
Name: NF6053_low_12
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 45 - 402
Target Start/End: Original strand, 54265911 - 54266266
Alignment:
| Q |
45 |
gcaaatatgacgtatagcaatgttacatttattcttctattgttctttggcacatgccagcttgttagaaacaccacaaacttgttgaaattataagaag |
144 |
Q |
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| T |
54265911 |
gcaaatatgacgtatagcaatgttacatttattcttctattgttctttggcacatgccagcttgttagaaacaccacaaacttgttgaaattataagaag |
54266010 |
T |
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| Q |
145 |
cttaattggtggtctagaattcaaacaagttttctttacaacattgaattacttcccaggaacaactattttctgcatggtcgtatagccatagaatcat |
244 |
Q |
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| T |
54266011 |
cttaattggtggtctagaattcaaacaagttttctttacaacattgaattacttcccaggaacaaatattttctgcatggtcgtattgcgatagaatcat |
54266110 |
T |
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| Q |
245 |
cctaagaggaaaatagcctcattttggatgagtaaatttaaacaaaacgattannnnnnnnnnngtctgaatggataaatcaagatatgagcaattttaa |
344 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54266111 |
cctaagaggaaaatagcctcatgttggatgagtaaatttgaacaaaacgatt--ttttttttttgtctgaatggataaatcaagatatgagcaattttaa |
54266208 |
T |
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| Q |
345 |
aaatcatattgcaagaaaagaagctcctaaaagcaaagtgtaaacccaaactacacaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266209 |
aaatcatattgcaagaaaagaagctcctaaaagcaaagtgtaaacccaaactacacaa |
54266266 |
T |
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