View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_15 (Length: 361)
Name: NF6053_low_15
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 43298631 - 43298982
Alignment:
| Q |
10 |
aagaaaattggacattgtaaaattatgcatacccctattcccaaaactttttgcactccatacatatggtataagccacaaactaattctcttatcactg |
109 |
Q |
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| T |
43298631 |
aagaaaattggacattgtaaaattatgcatacccctattcccaaaactttttgcactccatacatatggtataagccacaaactaattctcttatcactg |
43298730 |
T |
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| Q |
110 |
tatttagaccaggacaaagaccaccacatgtaacaacacaagcatacacttcctctgaatcaaaatatacctacaatacattcacttcacattacatatg |
209 |
Q |
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| T |
43298731 |
tatttagaccaggacaaagaccaccacatgtaacaacacaagcatacacttcctctgaatcaaaatatacctacaatacattcacttcacattacatatg |
43298830 |
T |
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| Q |
210 |
tggaaggaatcaaatgtttcaattttgaccacaagaagaatccaaattaaccttctgagcaggcccggcacgccgaaaaagagtccctcttggactattt |
309 |
Q |
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| T |
43298831 |
tggaaggaatcaaatgtttcaattttgaccacaagaaaaggccaaattaaccttctgagcaggcccggcacgccgaaaaagagtccctcttggactattt |
43298930 |
T |
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| Q |
310 |
ttatgcacaactatctacaaaaaggaaacaattttgaataattaactcaaaa |
361 |
Q |
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| T |
43298931 |
ttatgcacaactatctacaaaaaggaaacaattttgaataattaactcaaaa |
43298982 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 34226263 - 34226185
Alignment:
| Q |
67 |
ccatacatatggtataagccacaaactaattctcttatcactgtatttagaccaggacaaagaccaccacatgtaacaa |
145 |
Q |
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| T |
34226263 |
ccatacatatggtgtaagctacaaactaattcccttatcacagtgttgagtccaggacatagacctccacatgtaacaa |
34226185 |
T |
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