View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6053_low_16 (Length: 358)

Name: NF6053_low_16
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6053_low_16
NF6053_low_16
[»] chr1 (2 HSPs)
chr1 (31-343)||(28754344-28754656)
chr1 (1-38)||(28752275-28752312)
[»] chr2 (2 HSPs)
chr2 (82-312)||(45248099-45248329)
chr2 (87-319)||(44864223-44864455)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 31 - 343
Target Start/End: Original strand, 28754344 - 28754656
Alignment:
Q  31 tgacaatttttcgataacaagtctttcacattgaaatactcttctttattaacatccatgccttccacatatggaattccatcctgcaattggtaggttg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28754344 tgacaatttttcgataacaagtctttcacattgaaatactcttctttattaacatccatgccttccacatatggaattccatcctgcaattggtaggttg 28754443  T
Q  131 caacatcggagacactagaatcttcaggatcatctttagtaacaaaacaatcagcagcttttatcacaccttcatcctccacagccgcgcttaaattcgg 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28754444 caacatcagagacactagaatcttcaggatcatctttagtaacaaaacaatcagcagcttttatcacaccttcatcctccacagccgcgcttaaattcgg 28754543  T
Q  231 catagcaacgtttttaaccttgtgatcaccctcagtcacatcatctttaactccttgaagctcgttactcaatgcaactttctccacatcctcgccctcc 330  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28754544 caaagcaacttttttaaccttgtgatcaccctcagtcacatcatctttaactccttgaagctcgttactcaatgcaactttctccacatcctcgccctcc 28754643  T
Q  331 tgtttgatctgaa 343  Q
    |||||||||||||    
T  28754644 tgtttgatctgaa 28754656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28752312 - 28752275
Alignment:
Q  1 ttctgtggatgcccccgcagtttgatgccttgacaatt 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  28752312 ttctgtggatgcccccacagtttgatgccttgacaatt 28752275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 312
Target Start/End: Original strand, 45248099 - 45248329
Alignment:
Q  82 acatccatgccttccacatatggaattccatcctgcaattggtaggttgcaacatcggagacactagaatcttcaggatcatctttagt---aacaaaac 178  Q
    ||||| ||||||||| ||||| ||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||   ||||||||    
T  45248099 acatcaatgccttccgcatatcgaattccatcctgtaatcggtaggttgcaacatctgagacacgagaatcttcagaatcatctttagtaacaacaaaac 45248198  T
Q  179 aatcagcagcttttatcacaccttcatcctccacagccgcgcttaaattcggcatagcaacgtttttaaccttgtgatcaccctcagtcacatcatcttt 278  Q
     ||||||||||||||  ||||| |||||||||||| | || || ||||| | || |||||| |  ||   || ||| |    |||||||||||||||||     
T  45248199 tatcagcagcttttaaaacaccgtcatcctccacaactgcactaaaatttgccaaagcaacatcgtt---ctcgtgcttgtgctcagtcacatcatcttc 45248295  T
Q  279 aactccttgaagctcgttactcaatgcaactttc 312  Q
    ||||||||||| ||| ||||||||||||||||||    
T  45248296 aactccttgaacctcattactcaatgcaactttc 45248329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 87 - 319
Target Start/End: Complemental strand, 44864455 - 44864223
Alignment:
Q  87 catgccttccacatatggaattccatcctgcaattggtaggttgcaacatcggagacactagaatcttcaggatcatctttagt---aacaaaacaatca 183  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||   |||||||| ||||    
T  44864455 catgccttccacatatggaactccatcctgtaattggtaggttgcaacatctgagacacgagaatcttcaggatcatatttagtagcaacaaaactatca 44864356  T
Q  184 gcagcttttatcacaccttcatcctccacagccgcgcttaaattcggcatagcaacgtttttaac------cttgtgatcaccctcagtcacatcatctt 277  Q
    ||||||||||  |||||  ||||||||||| ||| ||||||         ||||||||||||| |      ||  || ||   |||||||||||||||||    
T  44864355 gcagcttttaaaacaccgccatcctccacaaccgtgcttaa---------agcaacgtttttagccccgttctcttgttcgtgctcagtcacatcatctt 44864265  T
Q  278 taactccttgaagctcgttactcaatgcaactttctccacat 319  Q
     ||||||||||| ||| |||||||||||||||||| ||||||    
T  44864264 caactccttgaacctcattactcaatgcaactttccccacat 44864223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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