View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6053_low_18 (Length: 322)

Name: NF6053_low_18
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6053_low_18
NF6053_low_18
[»] chr4 (1 HSPs)
chr4 (1-309)||(24501522-24501821)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 24501522 - 24501821
Alignment:
Q  1 tatttgagtttggataattataaaaatggtcggtcaaacaactttttattttgtcagttgaactagatttattttnnnnnnnnntacttggatttattcc 100  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  24501522 tatttgagcttggataattataaaaatggtcagtccaacaactttttattttgtcagttgaactagatttattt-aaaaaaaaatacttggatttattcc 24501620  T
Q  101 tttgttagtattctataataatttaacatggatttaaattgataaatcttttnnnnnnncatttaaattgataaataatgagagagaaataatgtttgtt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||||| | ||||||||||||||||||||||||||    
T  24501621 tttgttagtattctataataatataacatggatttaaattgataaatcttt--------catttaaattgaaacataatgagagagaaataatgtttgtt 24501712  T
Q  201 ttttaggaattatattgaaggaaattaaagtcagattaaggtaattttcttttaaggaaaattaaggtaatttttgtttactaaatataggagacatgga 300  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24501713 ttttaggaattatattaaaggaaattaaagtcaaattaaggtaattttcttttaaggaaaattaaggtaatttttgtttactaaatataggagacatgga 24501812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University