View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_2 (Length: 642)
Name: NF6053_low_2
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 176 - 450
Target Start/End: Complemental strand, 25924164 - 25923888
Alignment:
| Q |
176 |
ttttcatagatggtctcacaga-tgtggctatagacgctggtctaagttggcttaatccaaactgcctcgctaccagatggtgataatagccaatcagct |
274 |
Q |
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| T |
25924164 |
ttttcataaatggtctcacaaaatgtggcaatggtcgctgatctgaattggcttgatccaaattgacgcgctaccaaatgaggatgatagccaatcaact |
25924065 |
T |
|
| Q |
275 |
tgtaatcggttttgccagtggttattctca-aagagagaaaagtgggagtcaaataagccttccatacttcgactttatctttcatatgtttggcctctt |
373 |
Q |
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||||||| ||||||||||| |||||||||| |||| ||||||||||| |||||||||| |||||||||||||| || || |||| ||||| || | |
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| T |
25924064 |
tgtaatcagttttgccagtagttattctcacaaga-tgaaaagtgggaatcaaataagctttccatacttcgacattgtccttcaggtgttttatttcct |
25923966 |
T |
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| Q |
374 |
ttgatgggaattccctttg-aaccacttggggccttgcttacgaccaatgaagagagccatagttggttcaaaggtgt |
450 |
Q |
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| T |
25923965 |
tcgttggaaattccctttgaaaccacttaggacctagcttacgaccaacaaaaggatccatggttggttcaaaggtgt |
25923888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 176 - 618
Target Start/End: Complemental strand, 14951049 - 14950605
Alignment:
| Q |
176 |
ttttcatagatggtctcacaga-tgtggctatagacgctggtctaagttggcttaatccaaactgcctcgctaccagatggtgataatagccaatcagct |
274 |
Q |
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|||||||| ||||| ||||| | |||||| || | ||||||| | | ||||||||||| ||| || | |||||||| ||| | ||||||||||||| | |
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| T |
14951049 |
ttttcataaatggtttcacaaaatgtggcaatggtcgctggtttgaattggcttaatctaaattgacgcgctaccaaatgacggtaatagccaatcaaat |
14950950 |
T |
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| Q |
275 |
tgtaatcggttttgccagtggttattctca-aagagagaaaagtgggagtcaaataagccttccatacttcgactttatctttcatatgtttggcctctt |
373 |
Q |
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| T |
14950949 |
tgtaatcagttttgccagtagttattctcacaaga-aggaaagtgggagctaaataagctttccacacttcgacattgttcttcaagtgtttagtttcct |
14950851 |
T |
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| Q |
374 |
ttgatgggaattccctttg-aaccacttggggccttgcttacgaccaatgaagagagccatagttggttcaaaggtgtcacaaccagaaaagacgtccta |
472 |
Q |
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| T |
14950850 |
tcgttggaaattccctttgaaaccagttaggacctagcttatgaccaacaaaaggagccatggttggttcaaagatgtcacatctggaaaagacatcaga |
14950751 |
T |
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| Q |
473 |
atactctaaaatgttttcggcagatgagtggtcagttgtttttcttgtgagataggccagtcgaaatccttctatttttcgactgttaacttctttatta |
572 |
Q |
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| T |
14950750 |
gtactccaagaagtagtcaacagttgagtgaccagtagccttcttagtaagatgagctagtcgaaatccttcttttttttgactattaacttcttcatca |
14950651 |
T |
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| Q |
573 |
tgcactggtggaatgtggaaattcaaattttcttcaaacgtagcaa |
618 |
Q |
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|| || ||||||||||||||||| || ||| |||||| ||||||| |
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| T |
14950650 |
tggaccggtggaatgtggaaatttaactttgtttcaaaagtagcaa |
14950605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 176 - 618
Target Start/End: Complemental strand, 15378642 - 15378198
Alignment:
| Q |
176 |
ttttcatagatggtctcacaga-tgtggctatagacgctggtctaagttggcttaatccaaactgcctcgctaccagatggtgataatagccaatcagct |
274 |
Q |
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|||||||| ||||| ||||| | |||||| || | ||||||| | | ||||||||||| ||| || | |||||||| ||| | ||||||||||||| | |
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| T |
15378642 |
ttttcataaatggtttcacaaaatgtggcaatggtcgctggtttgaattggcttaatctaaattgacgcgctaccaaatgacggtaatagccaatcaaat |
15378543 |
T |
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| Q |
275 |
tgtaatcggttttgccagtggttattctca-aagagagaaaagtgggagtcaaataagccttccatacttcgactttatctttcatatgtttggcctctt |
373 |
Q |
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||||||| ||||||||||| |||||||||| |||| || |||||||||| |||||||| ||||| |||||||| || | |||| ||||| | || | |
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| T |
15378542 |
tgtaatcagttttgccagtagttattctcacaaga-aggaaagtgggagctaaataagctttccacacttcgacattgttcttcaagtgtttagtttcct |
15378444 |
T |
|
| Q |
374 |
ttgatgggaattccctttg-aaccacttggggccttgcttacgaccaatgaagagagccatagttggttcaaaggtgtcacaaccagaaaagacgtccta |
472 |
Q |
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| T |
15378443 |
tcgttggaaattccctttgaaaccagttaggacctagcttatgaccaacaaaaggagccatggttggttcaaagatgtcacatctggaaaagacatcaga |
15378344 |
T |
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| Q |
473 |
atactctaaaatgttttcggcagatgagtggtcagttgtttttcttgtgagataggccagtcgaaatccttctatttttcgactgttaacttctttatta |
572 |
Q |
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||||| || | || || ||| |||||| |||| | || | || |||| || ||||||||||||||| ||||| |||| |||||||||| || | |
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| T |
15378343 |
gtactccaagaagtagtcaacagttgagtgaccagtagccttcttagtaagatgagctagtcgaaatccttcttttttttgactattaacttcttcatca |
15378244 |
T |
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| Q |
573 |
tgcactggtggaatgtggaaattcaaattttcttcaaacgtagcaa |
618 |
Q |
| |
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|| || ||||||||||||||||| || ||| |||||| ||||||| |
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| T |
15378243 |
tggaccggtggaatgtggaaatttaactttgtttcaaaagtagcaa |
15378198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 20101318 - 20101385
Alignment:
| Q |
1 |
ggcacgaaatgttgtttcgtcaataaggtgagtgaaatagtatgaatgccaccacaaagagaaatttt |
68 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20101318 |
ggcatgaaatgttgtttcgtcaataaggtgagcaaaatagtatgaatgccaccacaaagagaaatttt |
20101385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 225 - 394
Target Start/End: Complemental strand, 20897744 - 20897575
Alignment:
| Q |
225 |
gcttaatccaaactgcctcgctaccagatggtgataatagccaatcagcttgtaatcggttttgccagtggttattctcaaagagagaaaagtgggagtc |
324 |
Q |
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|||||||||||| || | ||||||| ||| ||||||||||||| |||||| |||| ||||||||||| ||||| |||| || |||||| |||||||| |
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| T |
20897744 |
gcttaatccaaattgacgtgctaccaaatgaggataatagccaataagcttgaaatcagttttgccagtagttatcctcacaggaagaaaaatgggagtc |
20897645 |
T |
|
| Q |
325 |
aaataagccttccatacttcgactttatctttcatatgtttggcctcttttgatgggaattccctttgaa |
394 |
Q |
| |
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| T |
20897644 |
gaataagctttccacacttcaacattgtcctttaggtgtttggtttctttcgttggaaattccctttgaa |
20897575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 595
Target Start/End: Complemental strand, 20897437 - 20897373
Alignment:
| Q |
531 |
agtcgaaatccttctatttttcgactgttaacttctttattatgcactggtggaatgtggaaatt |
595 |
Q |
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| T |
20897437 |
agtcaaaatccttatatctttcgactgttaacttcttgatcatggaccggtggaatgtggaaatt |
20897373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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