View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_20 (Length: 309)
Name: NF6053_low_20
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 48727602 - 48727313
Alignment:
| Q |
1 |
tggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgaacaaatcctctagccaatctaaattttcctcttccaccaacaacagccaattcacg |
100 |
Q |
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| T |
48727602 |
tggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgagcaaatcctctagccaatctaaattttcctcttccaccaacaacagccaattcacg |
48727503 |
T |
|
| Q |
101 |
aattggttcactcacaggatttctcgaaaacacactaatagaactccctttgaattttcctgttgtgaaaccaaaatcagcatacataacaatcgttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48727502 |
aattggttcactcacaggatttctcgaaaacacactaatagaactccctttgaattttcctgttgtgaaaccaaaatcagcatacataacaatcgttaaa |
48727403 |
T |
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| Q |
201 |
ttttcactttgacttgaagacagataaagaccttgtgcatttccaatcaattttgaactttcatttggaccctcccttaagggatcatcg |
290 |
Q |
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| T |
48727402 |
ttttcactttgacttgaagacaaataaagaccttgtgcatttccaatcaattttgaactttcatttggaccctctcttaagggatcatcg |
48727313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 48724747 - 48724459
Alignment:
| Q |
1 |
tggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgaacaaatcctctagccaatctaaattttcctcttccaccaacaacagccaattcacg |
100 |
Q |
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||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
48724747 |
tggcatcaccatttttgtaattaagagaatgagtcttaacttgaacaaatcctctagcaaatctaaatttatctcttccaccaacaacagccaattcacg |
48724648 |
T |
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| Q |
101 |
aattggttcactcacaggatttctcgaaaacacactaatagaactccctttgaattttcctgttgtgaaaccaaaatcagcatacataacaatcgttaaa |
200 |
Q |
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| T |
48724647 |
atttgtttcagtaataggattcctcgaaaacacactaattgaactccctttgaatttccctgtggtgaaaccaaaatcagcgtacaaaacaagtgaaaga |
48724548 |
T |
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| Q |
201 |
ttttcactttgacttgaagacagataaagaccttgtgcatttccaatcaattttgaactttcatttggaccctcccttaagggatcatc |
289 |
Q |
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|||||||||||||| ||||| | |||||||||||||||||||||||||| ||| ||||||| |||||| ||||| ||||| |||||||| |
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| T |
48724547 |
ttttcactttgactcgaagataaataaagaccttgtgcatttccaatcactttagaacttttatttggtccctctcttaaaggatcatc |
48724459 |
T |
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