View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_22 (Length: 293)
Name: NF6053_low_22
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 46079016 - 46079295
Alignment:
| Q |
14 |
atatctgatcttatgtgctagtaaaaacatgattgaaatgataaaggagattgacacattaattttagactagtaggcaacaatcttatcaggaacattg |
113 |
Q |
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| T |
46079016 |
atatctgatcttatgtgctagtaaaaacatgattgaaatgataaaggagattgacacattaattttagactagtaggcaacaatcttatcaggaacattg |
46079115 |
T |
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| Q |
114 |
tggctttatgtatgtttagtcttaaactcaattaaagtatgaaatgaaataccactaatggcatgatttgagtaattttgctagaaagtacaactcctgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46079116 |
tggctttatgtatgtttagtcttaaactcaattaaagtatgaaatgaaataccactaatggcatgatttgagtaattttgctagaaagtacaactcctgt |
46079215 |
T |
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| Q |
214 |
ctttcaccaaaaaggttaaggaattgagtggtgtattcacatggaatggaaaggtgtaccccggccacaagagtggggaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46079216 |
ctttcaccaaaaaggttaaggaattgagtggtgtcttcacatggaatggaaaggtgtaccccggccacaagagtggggaa |
46079295 |
T |
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