View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_23 (Length: 275)
Name: NF6053_low_23
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 35688829 - 35688570
Alignment:
| Q |
12 |
acagattgaaccatacaaaccattgattcccactggtttctattcaacgagtctccaacaaacattaacctcttccctctaatcttcttaaacaacaatc |
111 |
Q |
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| T |
35688829 |
acagattgaaccatacaaaccattgattcccactggtttctattcaaagagtctccaacaaacattaacctcttccctctaatcttcttaaacaacaatc |
35688730 |
T |
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| Q |
112 |
ttggcttgaaccttaaattaagtacacaaaaatgcaatcgttaagaataataatattcatcaacaaaattggataattcaaagaattgaaaagnnnnnnn |
211 |
Q |
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| T |
35688729 |
ttggcttgaaccttaaattaagtacacaaaaatgcaatcattaagaataaaaatattcatcaacaaaattggataattcaaagagatgaaaa----aaat |
35688634 |
T |
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| Q |
212 |
nntgcatactttggcattgagcaatcttttggctgccatttccaattctgatacaaagaatcac |
275 |
Q |
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| T |
35688633 |
attgcatactttggcatagaacagtcttttggctgccatttccaattctgatacaaagaatcac |
35688570 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 31821925 - 31821838
Alignment:
| Q |
12 |
acagattgaaccatacaaaccattgattcccactggtttctattcaacgagtctccaacaaacattaacctcttccctctaatcttct |
99 |
Q |
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| T |
31821925 |
acagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctccaacaaacataagcctcttccctctaagcttct |
31821838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 31821706 - 31821664
Alignment:
| Q |
233 |
caatcttttggctgccatttccaattctgatacaaagaatcac |
275 |
Q |
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| T |
31821706 |
caatctcttggctgccacctccaattctgatacaaagaatcac |
31821664 |
T |
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