View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6053_low_27 (Length: 260)

Name: NF6053_low_27
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6053_low_27
NF6053_low_27
[»] chr7 (2 HSPs)
chr7 (21-96)||(22489820-22489895)
chr7 (187-217)||(22489698-22489728)
[»] chr6 (3 HSPs)
chr6 (21-95)||(19306411-19306485)
chr6 (63-95)||(10122907-10122939)
chr6 (187-217)||(19306289-19306319)
[»] chr5 (2 HSPs)
chr5 (21-96)||(25383510-25383586)
chr5 (187-217)||(25383681-25383711)
[»] chr4 (1 HSPs)
chr4 (21-96)||(48795824-48795892)
[»] chr1 (2 HSPs)
chr1 (187-217)||(28244645-28244675)
chr1 (63-95)||(28244775-28244807)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 22489820 - 22489895
Alignment:
Q  21 cgcaatatgctgctattagtctgctaaatctgtgaaactgaacatctgttatgaacaatgctctttatggcttgaa 96  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22489820 cgcaatatactgctattagtctgctaaatctgtgaaactgagcatctgttatgaacaatgctctttatggcttgaa 22489895  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 22489698 - 22489728
Alignment:
Q  187 caaaaatagtgaaaagagggttacaatgatg 217  Q
    |||||||||||||||||||||||||||||||    
T  22489698 caaaaatagtgaaaagagggttacaatgatg 22489728  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 19306411 - 19306485
Alignment:
Q  21 cgcaatatgctgctattagtctgctaaatctgtgaaactgaacatctgttatgaacaatgctctttatggcttga 95  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  19306411 cgcaatatgctgctattagtctgctaaatctgtgaaattgagcatatgttatgaacaatgctctttatggcttga 19306485  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 10122907 - 10122939
Alignment:
Q  63 catctgttatgaacaatgctctttatggcttga 95  Q
    |||||||||||||||||||||||||||||||||    
T  10122907 catctgttatgaacaatgctctttatggcttga 10122939  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 19306289 - 19306319
Alignment:
Q  187 caaaaatagtgaaaagagggttacaatgatg 217  Q
    |||||||||||||||||||||||||||||||    
T  19306289 caaaaatagtgaaaagagggttacaatgatg 19306319  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 25383586 - 25383510
Alignment:
Q  21 cgcaatatgctgctattagtctgctaaatctgtgaaactgaacatctgttatgaac-aatgctctttatggcttgaa 96  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  25383586 cgcaatatgctgctattagtctgctaaatctgtgaaactgagcatctgttatgaacttatgctctttatggcttgaa 25383510  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 25383711 - 25383681
Alignment:
Q  187 caaaaatagtgaaaagagggttacaatgatg 217  Q
    |||||||||||||||||||||||||||||||    
T  25383711 caaaaatagtgaaaagagggttacaatgatg 25383681  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 48795892 - 48795824
Alignment:
Q  21 cgcaatatgctgctattagtctgctaaatctgtgaaactgaacatctgttatgaacaatgctctttatggcttgaa 96  Q
    ||||||||||||||||||||||||       |||||||||| ||||||||||||| ||||||||||||||||||||    
T  48795892 cgcaatatgctgctattagtctgc-------gtgaaactgagcatctgttatgaagaatgctctttatggcttgaa 48795824  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 28244645 - 28244675
Alignment:
Q  187 caaaaatagtgaaaagagggttacaatgatg 217  Q
    |||||||||||||||||||||||||||||||    
T  28244645 caaaaatagtgaaaagagggttacaatgatg 28244675  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 28244775 - 28244807
Alignment:
Q  63 catctgttatgaacaatgctctttatggcttga 95  Q
    ||||| |||||||||||||||||||||||||||    
T  28244775 catctattatgaacaatgctctttatggcttga 28244807  T

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