View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_28 (Length: 252)
Name: NF6053_low_28
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 41992472 - 41992710
Alignment:
| Q |
17 |
aaggtggggtccatttgatgtttgtctggtggttttggaggcattgcacgcccttttataccccatcggtgcctctttactaagaccaacgtgggttggg |
116 |
Q |
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| T |
41992472 |
aaggtggggtccatttgatgtttgtctggtggttttggaggcattgcacgccctttcataccccatcggtgcctctttactaagaccaacgtgggttggg |
41992571 |
T |
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| Q |
117 |
accattacttcaagttctataagaacccatcacaaaccacaattctaaaatcaagtctttcata---aactcaactaccttttcatttcctaagagtttg |
213 |
Q |
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| T |
41992572 |
accattacttcaagttctataagaacccatcacaaaccacaattctaaaatcaagtctttcatacacaactcaactaccttttcatttcctaagagtttg |
41992671 |
T |
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| Q |
214 |
aacattagttgactctaaaaaatgaagatgggtgctatt |
252 |
Q |
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| T |
41992672 |
aacattagttgactctaaaaaatgaagatgggtgctatt |
41992710 |
T |
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