View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6053_low_29 (Length: 252)

Name: NF6053_low_29
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6053_low_29
NF6053_low_29
[»] chr1 (2 HSPs)
chr1 (139-252)||(46079278-46079391)
chr1 (17-107)||(46079385-46079475)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 46079391 - 46079278
Alignment:
Q  139 tttcataagagaaatcaactaaatgtgtatggtgcaaactaatactacaataataataccgaccatccatccatccataatttaaatattaattatttcc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46079391 tttcataagagaaatcaactaaatgtgtatggtgcaaactaatactgcaataataatacccaccatccatccatccataatttaaatattaattatttcc 46079292  T
Q  239 ccactcttgtggcc 252  Q
    ||||||||||||||    
T  46079291 ccactcttgtggcc 46079278  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 46079475 - 46079385
Alignment:
Q  17 agaaactcagcttataaactctttataaattcattttttatctttaatattatgtgaggcttgtgttttgccctataatatacattccata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  46079475 agaaactcagcttataaactctttataaattcattttttatctttaatattatgcgaggcttgtgttttgccctataatatacatttcata 46079385  T

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